FC876224

Overview
NameFC876224
Unique NameFC876224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:7..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.990e-16
Identity = 46/144 (31.94%), Postives = 80/144 (55.56%), Query Frame = 3
Query:   78 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKPE 506
            K+++GINGFGR+GRL  R      ++E V +N+         ++ K+DSVHG+W   E++ + ++ L+    P++      PE++PW + G + V+E +G F                VI++AP K+  +  V+GVN++ Y+PE
Sbjct:    2 KIRVGINGFGRMGRLALRAAWGWPELEFVHINEIKGGAVAAAHLLKFDSVHGRWT-PEVEAEGERVLI-DSTPLSFSEYGKPEDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPE 143          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.599e-16
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  120 LVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEY 497
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG++ +  ++VKD   ++ G+  + V   ++P  + W E G + V E+TG+F                V+++ PSK D PMFV+GVN   Y
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-NGSVEVKDGHLVVNGQT-IRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHIAAGAKKVVLTGPSKDDTPMFVMGVNLKSY 124          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_ESCBL (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia blattae GN=gap PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.599e-16
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  120 LVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFVVGVNEHEY 497
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG++ +  ++VKD   ++ G+K + V   R+P  + W E G E V E+TG+F                V+++ PSKD+ PMFV G N   Y
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-NGTVEVKDGHLIVNGKK-IRVTAERDPANLKWNEAGVEVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDSTPMFVRGANFDTY 124          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.394e-16
Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  120 LVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFVVGVNEHEY 497
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG++ +  ++VKD   ++ G K + V   ++P  + W E G + V E+TG+F                V+++ PSKDA PMFV G N  +Y
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-NGTVEVKDGHLVVNG-KTIRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDATPMFVRGANFDKY 124          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.394e-16
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 3
Query:   69 IMGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEY 497
            +  K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   ++K   D  +    K + V   RNP  +PW + G + V+E TGVF                V+I+AP K D P +VVGVNE  Y
Sbjct:   63 VEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-DVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGY 206          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 50/139 (35.97%), Postives = 76/139 (54.68%), Query Frame = 3
Query:   96 NGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHEYK 500
            NGFGRIGR   R +  R +  +E++A+ND        +++ KYDS  G++   ++K+ DD  +    K + V   R+P ++PW E   + V+E TGVF                V+I+AP+K  D P +VVGVN H+YK
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSG-GVKQASHLLKYDSTLGKFDA-DVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFIDTPGASKHIEAGAKKVLITAPAKGSDIPTYVVGVNAHDYK 137          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_LACDE (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=gap PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.876e-16
Identity = 53/142 (37.32%), Postives = 77/142 (54.23%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVIL----QRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET-GAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS-KDAPMFVVGVNE 488
            VKIGINGFGRIGRL  R I+    +  D+E+VA+ND   T   + ++ KYDS HG +  HE+   +D  ++ G+K   V+     + IPW +  G ++V+E TG +T               V+ISAP+  D    V  VN+
Sbjct:    3 VKIGINGFGRIGRLAFRRIMDLGEETKDIEVVAIND-LTTPAMLAHLLKYDSTHGTF-DHEVSATEDSLVVDGKK-YRVYAEPQAQNIPWVKNDGVDFVLECTGFYTSKAKSQAHLDAGAKRVLISAPAGNDLKTIVYSVNQ 141          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_ESCVU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia vulneris GN=gap PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.876e-16
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  120 LVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 497
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N   Y
Sbjct:    1 IVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDG-TVEVKDGHLVVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFDTY 124          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_ESCHE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia hermannii GN=gap PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.685e-15
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  120 LVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEY 497
            +V R    R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   ++P  + W E G + V E+TG+F                V+++ PSK D PMFV G N  +Y
Sbjct:    1 IVFRAAQTRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDG-TVEVKDGHLVVNGKK-IRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDDTPMFVKGANFDKY 124          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.685e-15
Identity = 54/140 (38.57%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVN 485
            +K+ ING+GRIGR V R   +   R D+E+VA+ND         ++ +YD+VHG++   E+ V  D   + G++ + V   RNP E+PW E G + V+E TG+FT               VIISAP  KD    +V GVN
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDIEIVAIND-LGNAATNAHLTQYDTVHGRFPG-EVSVDGDAFRVNGDR-IRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLRGGAKKVIISAPGGKDVDATIVYGVN 139          
The following BLAST results are available for this feature:
BLAST of FC876224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
G3P3_ANAVT1.990e-1631.94Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P_SEROD2.599e-1636.22Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ESCBL2.599e-1637.80Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_SERMA3.394e-1637.01Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_SPIOL3.394e-1635.62Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SCEVA5.790e-1635.97Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_LACDE9.876e-1637.32Glyceraldehyde-3-phosphate dehydrogenase OS=Lactob... [more]
G3P1_ESCVU9.876e-1637.01Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ESCHE1.685e-1536.22Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_RALEH1.685e-1538.57Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]

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Properties
Property NameValue
Genbank descriptionC32002A02EF DevOvary1 Citrus clementina cDNA clone C32002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876224 ID=FC876224; Name=FC876224; organism=Citrus clementina; type=EST; length=509bp
GGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACCGCT
CAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGG
ATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACG
ATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATG
ACATACATGTGTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGA
ATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCA
CTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTGGA
GCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAGGC
TGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCCCA
GCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACAAA
CCAGAGCTC
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