FC876224

Overview
NameFC876224
Unique NameFC876224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:7..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.685e-15
Identity = 50/138 (36.23%), Postives = 75/138 (54.35%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVN 485
            +++ INGFGRIGR V R I++  R D+E+VA+ND     +   ++ ++DSVHG++         D  +  G  P+ V  +RNP E+PWA  G +  +E TG+FT               V++SAP   A   +V GVN
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAIND-LGQVETNAHLLRFDSVHGRFP--AKVTSGDDWIDVGRGPIKVTAIRNPAELPWA--GVDMAMECTGIFTTKEKAAAHLQNGAKRVLVSAPCDGADRTIVYGVN 135          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.874e-15
Identity = 54/140 (38.57%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVN 485
            +K+ ING+GRIGR V R   +   R D+E+VA+ND         ++ +YD+VHG++   E+ V  D   + G++ + V   RNP E+PW E G + V+E TG+FT               VIISAP  KD    +V GVN
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDLEIVAIND-LGNAATNAHLTQYDTVHGRFPG-EVSVDGDAFRVNGDR-IRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLKGGAKKVIISAPGGKDVDATIVYGVN 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 52/142 (36.62%), Postives = 78/142 (54.93%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHE 494
            +++ INGFGRIGR V R +     R+ +++VA+ND         ++ +YDSVHG +   E++   +   + G++ + V  +RNP E+PW   G + V+E TG+FT               V+ISAP KD    VV GVN HE
Sbjct:    3 IRLAINGFGRIGRNVLRALYTGHYREQLQVVAIND-LGDAAVNAHLFQYDSVHGHFPG-EVEHDAESLRVMGDR-IAVSAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVLISAPGKDVEATVVYGVN-HE 140          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 53/149 (35.57%), Postives = 75/149 (50.34%), Query Frame = 3
Query:   69 IMGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 506
            +  K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +      V  D   + G K + V   RNP  +PW + G + V+E TGVF                V+I+AP K D P +VVGVN   Y P+
Sbjct:   54 VEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDG-KVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADLYNPD 200          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 55/147 (37.41%), Postives = 77/147 (52.38%), Query Frame = 3
Query:   84 KIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHEYKPE 506
            ++ INGFGRIGR   R  L R D  +E+V +ND   T+D  T  ++ +YDS+ G  K       D+ ++    K +     RNP  +PWAE   + V+E+TGVF                V+I+AP K  +   +VVGVN HEYK E
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGIND---TSDPRTNAHLLRYDSMLG--KLDADISADENSITVNGKTIKCVSDRNPLNLPWAEWNVDLVIEATGVFVTHEGATKHVQAGAKKVLITAPGKGPNIGTYVVGVNAHEYKHE 144          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P3_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli O157:H7 GN=gapC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.901e-15
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 3
Query:   84 KIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNE 488
            K+GINGFGRIGRLV R +L+ + ++++VA+ND   +   + Y+ K+DS +G +       +D  +L+   K + V+  +  + IPW   GAE +VE TG +T               V+ISAP+ +    V  VN+
Sbjct:    3 KVGINGFGRIGRLVLRRLLEVKSNIDVVAIND-LTSPKILAYLLKHDSNYGPFPWSVDFTED--SLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYKVND 135          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.402e-15
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   84 KIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKPEL 509
            +I INGFGRIGR V R +L+RD D+++VAVND       +  +  YD+  G+     + V+ +  ++ G + +TV   R P  +PWAE G + V+E+TG FT               V++SAP+  A +    GVN   Y P+L
Sbjct:    3 RIAINGFGRIGRNVLRALLERDSDLDVVAVND-LTEPATLARLLAYDTTSGRLGR-PVTVEGNVLVVDGRR-ITVTAEREPANLPWAELGVDIVLEATGRFTSAKAARAHLDAGAKKVLVSAPADGADITLAFGVNTDAYDPDL 143          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.361e-15
Identity = 55/146 (37.67%), Postives = 77/146 (52.74%), Query Frame = 3
Query:   78 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM--FVVGVNEHEY 497
            KV++ INGFGRIGR   R    R D  +++V +ND   T+   T  ++ KYDS+ G +    +  +D  T+    K + V   RNP E+PW E   + VVE+TGVF                V+I+AP K   +  FVVGVN+H Y
Sbjct:   80 KVRVAINGFGRIGRNFIRCWAGRTDSNMDVVCIND---TSGVKTASHLLKYDSILGTFDSDVVAGEDSITV--DGKTIKVVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLITAPGKGEGVGTFVVGVNDHLY 220          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 8.361e-15
Identity = 52/143 (36.36%), Postives = 73/143 (51.05%), Query Frame = 3
Query:   78 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEY 497
            K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +   ++K   +  +    K + V   RNP  +PW E G + V+E TGVF                VII+AP K D P +VVGVN   Y
Sbjct:   61 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDA-DVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAY 201          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_HALVA (Glyceraldehyde-3-phosphate dehydrogenase OS=Haloarcula vallismortis GN=gap PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.092e-14
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFG--EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPM--FVVGVNEHEYKPE 506
            V++G+NGFGRIGR V R  L  DDVE+V +ND    ++ + Y  +YDSV G+ +   +   DD  L     +    +F   +P ++PW +   +   E+TG+F                V+ISAP K D P+   V GVN  EY  E
Sbjct:    6 VRVGLNGFGRIGRNVFRASLHSDDVEIVGINDVMDDSE-IDYFAQYDSVMGELEGASV---DDGVLTVDGTDFEAGIFHETDPTQLPWDDLDVDVAFEATGIFRTKEDASQHLDAGADKVLISAPPKGDEPVKQLVYGVNHDEYDGE 148          
The following BLAST results are available for this feature:
BLAST of FC876224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
G3P2_RHOSH1.685e-1536.23Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3PP_RALEH2.874e-1538.57Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3P_PSEAE3.753e-1536.62Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
G3PA_TOBAC3.753e-1535.57Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_SYNY33.753e-1537.41Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3P3_ECO574.901e-1534.56Glyceraldehyde-3-phosphate dehydrogenase C OS=Esch... [more]
G3P_STRAU6.402e-1536.11Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PA_GRAVE8.361e-1537.67Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_ARATH8.361e-1536.36Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_HALVA1.092e-1435.37Glyceraldehyde-3-phosphate dehydrogenase OS=Haloar... [more]

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Properties
Property NameValue
Genbank descriptionC32002A02EF DevOvary1 Citrus clementina cDNA clone C32002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876224 ID=FC876224; Name=FC876224; organism=Citrus clementina; type=EST; length=509bp
GGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACCGCT
CAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGG
ATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACG
ATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATG
ACATACATGTGTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGA
ATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCA
CTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTGGA
GCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAGGC
TGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCCCA
GCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACAAA
CCAGAGCTC
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