FC876224

Overview
NameFC876224
Unique NameFC876224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:7..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.092e-14
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 3
Query:  120 LVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 497
            +V R   +R D+E+V +ND  +  +YM YM KYDS HG++    ++VKD   ++ G K + V   ++P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N   Y
Sbjct:    1 IVFRAAQKRSDIEIVGIND-LLDAEYMAYMLKYDSTHGRFDG-TVEVKDGHLVVNG-KTIRVTAEKDPANLKWNEIGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFETY 124          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.426e-14
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 3
Query:   78 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM--FVVGVNEHEY 497
            KV++ INGFGRIGR   R    R D  +E+V +ND   T+   T  ++ KYDS+ G +       +D  T+    K + +   RNP ++PW E   + VVE+TGVF                V+I+AP K   +  FVVGVNE +Y
Sbjct:   78 KVRVAINGFGRIGRNFIRCWAGRSDSNMEVVCIND---TSGVKTASHLLKYDSILGTFDADVSAGED--TISVNGKTIKIVSNRNPLQLPWKEMNIDIVVEATGVFVDAPGAGKHIEAGAKKVLITAPGKGDGIGTFVVGVNEKDY 218          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P3_ECOLI (Putative glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli (strain K12) GN=gapC PE=5 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.426e-14
Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 3
Query:   84 KIGINGFGRIGRLV-ARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNE 488
            K+GINGFGRIGRLV  R++  + ++++VA+ND   +   + Y+ K+DS +G +       +D  +L+   K + V+  +  + IPW   GAE +VE TG +T               V+ISAP+ +    V  VN+
Sbjct:    3 KVGINGFGRIGRLVLGRLLEVKSNIDVVAIND-LTSPKILAYLLKHDSNYGPFPWSVDFTED--SLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYNVND 135          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.863e-14
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF-TXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEH 491
            VK+GINGFGRIGRL  R I + + VE+  +ND       + ++ KYD+  G++K   ++VK+D   + G K V V   RNPE+I WA++G E V+E+TG F T               V+I+AP  +    VV    H
Sbjct:    3 VKVGINGFGRIGRLALRRIQEVEGVEVAHIND-LTDPAMLAHLLKYDTTQGRFK-GTVEVKEDGFDVNG-KFVKVTAERNPEDIQWADSGVEIVLEATGFFATKEKAEKHLHPGGAKKVLITAPGGNDVKTVVFNTNH 137          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.433e-14
Identity = 50/151 (33.11%), Postives = 86/151 (56.95%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMT--YMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFT-----XXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEYKPEL 509
            +K+ INGFGRIGR V ++  +R  +++VA+ND    TD  T  ++ KYDS  G + + +++ +D   ++ G + + +   R+P+ +PWA+ G + V+ESTGVF+                    VI++ P+KD     V+GVN+H+   +L
Sbjct:    1 MKLAINGFGRIGRNVFKIAFERG-IDIVAIND---LTDPKTLAHLLKYDSTFGVY-NKKVESRDGAIVVDGRE-IKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDL 145          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.149e-14
Identity = 52/143 (36.36%), Postives = 72/143 (50.35%), Query Frame = 3
Query:   78 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEY 497
            ++K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +      V  D   + G K + V   RNP  +PW E G + V+E TGVF                V+I+AP K D P +VVGVN   Y
Sbjct:   70 QLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDG-KVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKGDIPTYVVGVNADAY 210          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   87 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHE 494
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK     M V GVN+++
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQ 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   87 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHE 494
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK     M V GVN+++
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQ 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   87 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHE 494
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK     M V GVN+++
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQ 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P2_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   87 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHE 494
            I ING GRIGR+V R+ LQ  ++ +VA+N  +   + + ++  YD+ HG+   + LKV+  +  L  G+  + +   RNPE +PW E   +  +++TG F                V+++ PSK     M V GVN+++
Sbjct:    5 IAINGMGRIGRMVLRIALQNKNLNVVAINASY-PPETIAHLINYDTTHGK---YNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQ 139          
The following BLAST results are available for this feature:
BLAST of FC876224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
G3P_ENTAE1.092e-1435.43Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_CHOCR1.426e-1436.99Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P3_ECOLI1.426e-1433.82Putative glyceraldehyde-3-phosphate dehydrogenase ... [more]
G3P_LACLA1.863e-1438.41Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]
G3P_BORBU2.433e-1433.11Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3PA_PEA4.149e-1436.36Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_STAAW5.419e-1431.65Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS5.419e-1431.65Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN5.419e-1431.65Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAM5.419e-1431.65Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC32002A02EF DevOvary1 Citrus clementina cDNA clone C32002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876224 ID=FC876224; Name=FC876224; organism=Citrus clementina; type=EST; length=509bp
GGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACCGCT
CAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGG
ATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACG
ATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATG
ACATACATGTGTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGA
ATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCA
CTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTGGA
GCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAGGC
TGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCCCA
GCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACAAA
CCAGAGCTC
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