FC876224

Overview
NameFC876224
Unique NameFC876224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:7..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_STAAU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus GN=gapA1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHE 494
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHE 494
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MRSA252) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHE 494
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain N315) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHE 494
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHE 494
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain COL) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHE 494
            VK+ INGFGRIGRL  R I + + +E+VAVND     D + ++ KYD++ G++   E++V D    + G K V  F   +  ++PW +   + V+E TG +T               V+ISAP+  D    V   N  E
Sbjct:    3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 138          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.974e-12
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 3
Query:   87 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHE 494
            I ING GRIGR+V R+ L   ++ + A+N  +   + + ++  YD+ HG +   + KV+  +  +      + +   RNPE +PW E   + V+E+TG F                V+++ PSK  D  M V GVN+++
Sbjct:    5 IAINGMGRIGRMVLRIALNNKNLNVKAINASY-PPETIAHLLNYDTTHGVY---DKKVEPIESGIKVNGHEIKLLSDRNPENLPWNEMDIDVVIEATGKFNHGDKAVAHINAGAKKVLLTGPSKGGDVQMIVKGVNDNQ 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P2_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.974e-12
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 3
Query:   87 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKD-DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHE 494
            I ING GRIGR+V R+ L   ++ + A+N  +   + + ++  YD+ HG +   + KV+  +  +      + +   RNPE +PW E   + V+E+TG F                V+++ PSK  D  M V GVN+++
Sbjct:    5 IAINGMGRIGRMVLRIALNNKNLNVKAINASY-PPETIAHLLNYDTTHGVY---DKKVEPIESGIKVNGHEIKLLSDRNPENLPWNEMDIDVVIEATGKFNHGDKAVAHINAGAKKVLLTGPSKGGDVQMIVKGVNDNQ 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_PROMH (D-erythrose-4-phosphate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=epd PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.625e-12
Identity = 46/148 (31.08%), Postives = 80/148 (54.05%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK---DAPMFVVGVNEHEYKPE 506
            +++ INGFGRIGR V R + +   R ++ +VA+N+    T  + ++ KYDS HG++   +++V +D  L  G+  + +F   +  ++PW E G + V++ +GV+                V+ S P     DA + V GVN+HE K +
Sbjct:    3 IRVAINGFGRIGRNVLRALYESGKRAEISVVAINELADATG-IAHLLKYDSSHGRFA-WDIRVNND-LLQVGDDAIRLFHHADIADLPWGELGIDVVLDCSGVYGSRADGEAHIAQGAKKVLFSHPGTIDLDATV-VFGVNQHELKKQ 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_SHISS (D-erythrose-4-phosphate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=epd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
The following BLAST results are available for this feature:
BLAST of FC876224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
G3P1_STAAU1.743e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAS1.743e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAR1.743e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAN1.743e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAM1.743e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAC1.743e-1234.53Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P2_STAES2.974e-1230.22Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAEQ2.974e-1230.22Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
E4PD_PROMH6.625e-1231.08D-erythrose-4-phosphate dehydrogenase OS=Proteus m... [more]
E4PD_SHISS8.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]

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Properties
Property NameValue
Genbank descriptionC32002A02EF DevOvary1 Citrus clementina cDNA clone C32002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876224 ID=FC876224; Name=FC876224; organism=Citrus clementina; type=EST; length=509bp
GGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACCGCT
CAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGG
ATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACG
ATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATG
ACATACATGTGTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGA
ATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCA
CTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTGGA
GCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAGGC
TGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCCCA
GCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACAAA
CCAGAGCTC
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