FC876316

Overview
NameFC876316
Unique NameFC876316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:13..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.013e-31
Identity = 60/84 (71.43%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E+R AQRA GPAT++AIGT+TP +  +Q+ YPDYYFRIT SEH+ ELKEKF+RMC+KSMIKKR+M+LTEEIL ENPN+C
Sbjct:    1 MVTVEEVRKAQRAQGPATIMAIGTSTPQNCVDQSTYPDYYFRITNSEHLVELKEKFKRMCEKSMIKKRYMYLTEEILTENPNIC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_PINST (Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.322e-31
Identity = 62/84 (73.81%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            MA ++  R AQRADGPAT+LAIGTATP ++ +Q+ YPDYYF+IT SEHMTELKEKFRRMCDKS IKKR+M+LTEEIL ENP++C
Sbjct:    6 MADLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSGIKKRYMYLTEEILNENPSVC 89          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.322e-31
Identity = 61/81 (75.31%), Postives = 71/81 (87.65%), Query Frame = 1
Query:   55 VQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            +  IR AQR  GPAT+LAIGTATP++   QADYPDYYFRITKSEHM +LKEKF+RMCDKSMI+KR+MHLTEE LKENP++C
Sbjct:    7 IAAIREAQRRQGPATILAIGTATPSNCVYQADYPDYYFRITKSEHMVDLKEKFKRMCDKSMIRKRYMHLTEEYLKENPSLC 87          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS6_TRISU (Chalcone synthase 6 OS=Trifolium subterraneum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.322e-31
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   QA YPD+YF+IT SEH TELKEKF+RMCDKSMIK R+M+LTEEILKENP++C
Sbjct:    1 MVSVAEIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKTELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS8_MEDSA (Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.256e-31
Identity = 61/84 (72.62%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRTAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS4_MEDSA (Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.256e-31
Identity = 61/84 (72.62%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.946e-31
Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E+R AQRA+GPAT+LAIGTATP +  +Q+ YPD+YFR+T SEH  ELK KF+RMCD S IKKR+MHLTEEILKENPN+C
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPPNYVDQSTYPDFYFRVTNSEHKKELKAKFQRMCDNSQIKKRYMHLTEEILKENPNIC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS6_PEA (Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.946e-31
Identity = 61/84 (72.62%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTATPA+   Q+ YPD+YF+IT SEH T LKEKF+RMCDKSMIK+R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTATPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYMYLTEEILKENPSLC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS5_MEDSA (Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.946e-31
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIRNAQRA+GPAT LAIGTA P +   Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRNAQRAEGPATTLAIGTANPTNCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: THS4_VITVI (Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT00005194001 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.848e-31
Identity = 62/83 (74.70%), Postives = 76/83 (91.57%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNM 294
            MA+V+EIRNAQRA GPATVLAIGTATP +   Q+D+ DYYFR+TKSEHMTELK+KF R+CDKSMIKKR++HLTEE+L+E+PN+
Sbjct:    1 MASVEEIRNAQRAKGPATVLAIGTATPDNCLYQSDFADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNI 83          
The following BLAST results are available for this feature:
BLAST of FC876316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHSE_IPOPU1.013e-3171.43Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHSY_PINST1.322e-3173.81Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=... [more]
CHSY_CALCH1.322e-3175.31Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHS6_TRISU1.322e-3173.81Chalcone synthase 6 OS=Trifolium subterraneum GN=C... [more]
CHS8_MEDSA2.256e-3172.62Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=... [more]
CHS4_MEDSA2.256e-3172.62Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=... [more]
CHSY_HYDMC2.946e-3171.43Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]
CHS6_PEA2.946e-3172.62Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 ... [more]
CHS5_MEDSA2.946e-3172.62Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2... [more]
THS4_VITVI3.848e-3174.70Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT000... [more]

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Properties
Property NameValue
Genbank descriptionC32003C08EF DevOvary1 Citrus clementina cDNA clone C32003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876316 ID=FC876316; Name=FC876316; organism=Citrus clementina; type=EST; length=298bp
ACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAATGGC
AACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCG
TCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGCCAACCAGGCTGAT
TATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGAGCT
TAAAGAGAAGTTCAGGCGCATGTGTGACAAGTCGATGATTAAGAAGCGCC
ACATGCACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGCG
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