FC876316

Overview
NameFC876316
Unique NameFC876316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:13..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS6_SOYBN (Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.545e-32
Identity = 62/84 (73.81%), Postives = 75/84 (89.29%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V+EIR AQRA+GPATV+AIGTATP +  +Q+ YPDYYFRIT S+HM ELKEKF+RMCDKSMIKKR+M+L EEILKENP++C
Sbjct:    1 MVSVEEIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSDHMNELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: VPS_HUMLU (Phloroisovalerophenone synthase OS=Humulus lupulus GN=VPS PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.936e-32
Identity = 60/82 (73.17%), Postives = 76/82 (92.68%), Query Frame = 1
Query:   52 TVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            TV++IR AQRA+GPAT+LAIGTA PA+  NQAD+PDYYFR+TKSEHMT+LK+KF+RMC+KS IKKR++HLTEE LK+NP++C
Sbjct:    5 TVEQIRKAQRAEGPATILAIGTAVPANCFNQADFPDYYFRVTKSEHMTDLKKKFQRMCEKSTIKKRYLHLTEEHLKQNPHLC 86          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: THS7_VITVI (Stilbene synthase 6 OS=Vitis vinifera GN=STS PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.936e-32
Identity = 62/83 (74.70%), Postives = 75/83 (90.36%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNM 294
            MA+V+E RNAQRA GPAT+LAIGTATP H   Q+DY DYYFR+TKSEHMTELK+KF R+CDKSMIKKR++HLTEE+L+E+PN+
Sbjct:    1 MASVEEFRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNI 83          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: THS1_VITVI (Stilbene synthase 1 OS=Vitis vinifera GN=VINST1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.936e-32
Identity = 62/83 (74.70%), Postives = 75/83 (90.36%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNM 294
            MA+V+E RNAQRA GPAT+LAIGTATP H   Q+DY DYYFR+TKSEHMTELK+KF R+CDKSMIKKR++HLTEE+L+E+PN+
Sbjct:    1 MASVEEFRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNI 83          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.936e-32
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 1
Query:   49 ATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            A ++EIRN QRA GPA +LAIGTATP++   QADYPDYYFRIT SEHMT+LK KF+RMC+KSMI+KR+MH+TEE LKENPN+C
Sbjct:    7 AEIEEIRNRQRAQGPANILAIGTATPSNCVYQADYPDYYFRITNSEHMTDLKLKFKRMCEKSMIRKRYMHITEEYLKENPNVC 89          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.936e-32
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 1
Query:   49 ATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            +++ EIR AQRADGPA +LAIGTA P +   QA+YPDYYFRIT SEHMT+LKEKF+RMCDKS I+KRHMHLTEE LKENP+MC
Sbjct:    7 SSLDEIRQAQRADGPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEFLKENPHMC 89          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.936e-32
Identity = 62/84 (73.81%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+R+M+LTEEILKENPN+C
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_PINSY (Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.753e-32
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M  ++  R AQRADGPAT+LAIGTATP ++ +Q+ YPDYYF+IT SEHMTELKEKFRRMCDKS IKKR+M+LTEEILKENP +C
Sbjct:    6 MKDLEAFRKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILKENPKVC 89          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.753e-32
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   52 TVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            +++EIR AQRADGPA +L IGTA P +   QA+YPDYYFRIT S+HMT+LKEKF+RMCDKSMI+KRHMHLTEE LKENP MC
Sbjct:    4 SLEEIRKAQRADGPAGILGIGTANPPNHVLQAEYPDYYFRITNSDHMTDLKEKFKRMCDKSMIRKRHMHLTEEFLKENPKMC 85          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: THS2_VITVI (Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT00004047001 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.013e-31
Identity = 62/83 (74.70%), Postives = 75/83 (90.36%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNM 294
            MA+V+EIRNAQRA GPAT+LAIGTATP H   Q+DY DYYFR+TKSEHMT LK+KF R+CDKSMIKKR++HLTEE+L+E+PN+
Sbjct:    1 MASVEEIRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEEHPNI 83          
The following BLAST results are available for this feature:
BLAST of FC876316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS6_SOYBN4.545e-3273.81Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV... [more]
VPS_HUMLU5.936e-3273.17Phloroisovalerophenone synthase OS=Humulus lupulus... [more]
THS7_VITVI5.936e-3274.70Stilbene synthase 6 OS=Vitis vinifera GN=STS PE=2 ... [more]
THS1_VITVI5.936e-3274.70Stilbene synthase 1 OS=Vitis vinifera GN=VINST1 PE... [more]
CHSY_PETCR5.936e-3273.49Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHSY_ARATH5.936e-3274.70Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHS2_MEDSA5.936e-3273.81Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]
CHSY_PINSY7.753e-3273.81Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 ... [more]
CHSY_ARAAL7.753e-3274.39Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=... [more]
THS2_VITVI1.013e-3174.70Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT000... [more]

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Properties
Property NameValue
Genbank descriptionC32003C08EF DevOvary1 Citrus clementina cDNA clone C32003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876316 ID=FC876316; Name=FC876316; organism=Citrus clementina; type=EST; length=298bp
ACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAATGGC
AACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCG
TCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGCCAACCAGGCTGAT
TATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGAGCT
TAAAGAGAAGTTCAGGCGCATGTGTGACAAGTCGATGATTAAGAAGCGCC
ACATGCACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGCG
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