FC876316

Overview
NameFC876316
Unique NameFC876316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:13..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.669e-34
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E R AQRA+GPAT+LAIGT+TP++  +Q+ YPDYYFRIT SEH TELKEKF+RMCDKSMIKKR+MHLTEEILKENPNMC
Sbjct:    1 MVTVEEYRKAQRAEGPATILAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSA_SOLTU (Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.669e-34
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E R AQRA+GPAT+LAIGT+TP++  +Q+ YPDYYFRIT SEH TELKEKF+RMCDKSMIKKR+MHLTEEILKENPNMC
Sbjct:    1 MVTVEEYRKAQRAEGPATILAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.669e-34
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E R AQRA+GPAT+LAIGT+TP++  +Q+ YPDYYFRIT SEH TELKEKF+RMCDKSMIKKR+MHLTEEILKENPNMC
Sbjct:    1 MVTVEEYRKAQRAEGPATILAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_PHAVU (Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS17 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.180e-34
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTATP++  +Q+ YPDYYFRIT SEHMT+LKEKF+RMCDKSMIKKR+MHL EEILKENPNMC
Sbjct:    1 MVSVSEIRQAQRAEGPATILAIGTATPSNCVDQSTYPDYYFRITNSEHMTDLKEKFQRMCDKSMIKKRYMHLNEEILKENPNMC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.180e-34
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E+R AQRA+GPATVLAIGTATPA+  +Q+ YPDYYFRIT SEHMTELKEKF+RMCDKS IK+R+MHLTEEILKENP MC
Sbjct:    1 MVTVEEVRRAQRAEGPATVLAIGTATPANCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSNIKRRYMHLTEEILKENPAMC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.180e-34
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E+R AQRA GPAT++AIGTATP++  +Q+ YPDYYFRIT SEHMTELKEKF+RMCDKSMI KR+MHLTEEILKENPN+C
Sbjct:    1 MVTVEEVRKAQRAKGPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMINKRYMHLTEEILKENPNIC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS2_SOLLC (Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.180e-34
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E+R AQRA GPAT++AIGTATP++  +Q+ YPDYYFRIT SEHMTELKEKF+RMCDKSMI KR+MHLTEEILKENPN+C
Sbjct:    1 MVTVEEVRRAQRAKGPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMINKRYMHLTEEILKENPNIC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS6_IPOBA (Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DII PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.847e-34
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E+R AQRA+GPAT+LAIGTATPA+  NQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KR+MHLTEEILKENP+ C
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.718e-34
Identity = 66/83 (79.52%), Postives = 76/83 (91.57%), Query Frame = 1
Query:   49 ATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            A ++EIRNAQRA+GPAT+LAIGTATPA+   QADYPD+YFRIT SEH TELKEKF+RMCDKSMIKKR+MHLTE++LKENP MC
Sbjct:    5 ALMEEIRNAQRAEGPATILAIGTATPANCVIQADYPDFYFRITNSEHKTELKEKFQRMCDKSMIKKRYMHLTEDLLKENPKMC 87          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS2_MAIZE (Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.718e-34
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 1
Query:   52 TVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            TV+E+R AQRA GPATVLAIGTATPA+   QADYPDYYFRITKSEH+T+LKEKF+RMCDKSMI+KR+MHLTEE L ENP+MC
Sbjct:    7 TVEEVRKAQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSEHLTDLKEKFKRMCDKSMIRKRYMHLTEEFLAENPSMC 88          
The following BLAST results are available for this feature:
BLAST of FC876316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHSB_SOLTU1.669e-3478.57Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]
CHSA_SOLTU1.669e-3478.57Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A... [more]
CHS1_SOLLC1.669e-3478.57Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]
CHSY_PHAVU2.180e-3478.57Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS1... [more]
CHSY_ANTMA2.180e-3479.76Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]
CHS2_SOLTU2.180e-3477.38Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P... [more]
CHS2_SOLLC2.180e-3477.38Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS... [more]
CHS6_IPOBA2.847e-3478.57Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DI... [more]
CHSY_CHRAE3.718e-3479.52Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
CHS2_MAIZE3.718e-3480.49Chalcone synthase C2 OS=Zea mays GN=C2 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32003C08EF DevOvary1 Citrus clementina cDNA clone C32003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876316 ID=FC876316; Name=FC876316; organism=Citrus clementina; type=EST; length=298bp
ACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAATGGC
AACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCG
TCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGCCAACCAGGCTGAT
TATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGAGCT
TAAAGAGAAGTTCAGGCGCATGTGTGACAAGTCGATGATTAAGAAGCGCC
ACATGCACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGCG
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