FC876316

Overview
NameFC876316
Unique NameFC876316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:13..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.848e-31
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.025e-31
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS5_TRISU (Chalcone synthase 5 OS=Trifolium subterraneum GN=CHS5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.563e-31
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK R+M+LTEEILKENP++C
Sbjct:    1 MVSVAEIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS2_TRISU (Chalcone synthase 2 OS=Trifolium subterraneum GN=CHS2 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.563e-31
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANRVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS5_PEA (Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.572e-31
Identity = 60/84 (71.43%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   Q+ YPD+YFRIT SEH TELK+KF+RMCDKSMI +R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKTELKQKFQRMCDKSMINRRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS3_PEA (Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.572e-31
Identity = 60/84 (71.43%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA PA+   Q+ YPD+YFRIT SEH TELK+KF+RMCDKSMI +R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKTELKQKFQRMCDKSMINRRYMYLTEEILKENPSVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS2_PEA (Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.572e-31
Identity = 60/84 (71.43%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV EIR AQRA+GPAT+LAIGTA PA+   Q+ YPD+YF+IT SEH T LKEKF+RMCDKSMIK+R+M+LTE+ILKENP++C
Sbjct:    1 MVTVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYMYLTEDILKENPSLC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.572e-31
Identity = 59/83 (71.08%), Postives = 72/83 (86.75%), Query Frame = 1
Query:   49 ATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            A ++EIR  QRA GPA +LAIGTATP++   QADYPDYYFRIT SEHM++LK KF+RMC+KSMI+KR+MH+TEE LKENPN+C
Sbjct:    6 AEIEEIRKRQRAQGPANILAIGTATPSNCVYQADYPDYYFRITNSEHMSDLKLKFKRMCEKSMIRKRYMHITEEYLKENPNVC 88          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS3_CAMSI (Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.120e-30
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+++  AQRA GPATVLAIGTATP +  +Q+ YPDYYFRIT SEH  ELKEKF+RMCDKSMIKKR+M+LTEEILKENP +C
Sbjct:    1 MVTVEDVWRAQRARGPATVLAIGTATPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCDKSMIKKRYMYLTEEILKENPLVC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS9_MEDSA (Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.462e-30
Identity = 59/84 (70.24%), Postives = 73/84 (86.90%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT++AIGTA PA+   Q+ YPD+YF+IT SEH  ELKEKF+RMCDKSMIK+R+M+LTEEILKENP++C
Sbjct:    1 MVSVSEIRQAQRAEGPATIMAIGTANPANCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVC 84          
The following BLAST results are available for this feature:
BLAST of FC876316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS3_TRISU3.848e-3172.62Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]
CHS4_TRISU5.025e-3172.62Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
CHS5_TRISU6.563e-3172.62Chalcone synthase 5 OS=Trifolium subterraneum GN=C... [more]
CHS2_TRISU6.563e-3172.62Chalcone synthase 2 OS=Trifolium subterraneum GN=C... [more]
CHS5_PEA8.572e-3171.43Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 ... [more]
CHS3_PEA8.572e-3171.43Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 ... [more]
CHS2_PEA8.572e-3171.43Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 ... [more]
CHS2_DAUCA8.572e-3171.08Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS3_CAMSI1.120e-3073.81Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 P... [more]
CHS9_MEDSA1.462e-3070.24Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32003C08EF DevOvary1 Citrus clementina cDNA clone C32003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876316 ID=FC876316; Name=FC876316; organism=Citrus clementina; type=EST; length=298bp
ACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAATGGC
AACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCG
TCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGCCAACCAGGCTGAT
TATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGAGCT
TAAAGAGAAGTTCAGGCGCATGTGTGACAAGTCGATGATTAAGAAGCGCC
ACATGCACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGCG
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