FC876316

Overview
NameFC876316
Unique NameFC876316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:13..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTF (Chalcone synthase A (Fragment) OS=Ipomoea trifida GN=CHSA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 1
Query:   49 ATVQEIRN-AQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            ATVQ   + A+R +G A +LAIGTATP +  +QA YPD+YFRIT SEH+ E KEKFRR+C+KS I+KRH+ LT+E+LK+NPN+C
Sbjct:    5 ATVQLTDDTAKRFEGHAKLLAIGTATPTNWVDQATYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHLVLTKELLKKNPNLC 88          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSA_IPONI (Chalcone synthase A (Fragment) OS=Ipomoea nil GN=CHSA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.579e-23
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   67 RNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            R  +R +G A +LAIGTA PA+  +Q  YPD+YFRIT SEH+ E KEKFRR+C+KS I+KRH+ +TEE+LK+NPN+C
Sbjct:   11 RREKRIEGHAKILAIGTAIPANWVDQTTYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHLVITEELLKKNPNLC 87          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTF (Chalcone synthase B (Fragment) OS=Ipomoea trifida GN=CHSB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.122e-22
Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   67 RNAQR--ADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            R A+R   +G A +LAIGTATPA+  +Q  YPD+YFRIT S+H+ E KEKFRR+C+KS I+KRHM LTEE+LK+NPN+C
Sbjct:   14 RRAKRFEIEGYAKILAIGTATPANWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSNIRKRHMVLTEELLKKNPNLC 92          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSB_IPONI (Chalcone synthase B (Fragment) OS=Ipomoea nil GN=CHSB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.466e-22
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:   73 AQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            A++ +G A + AIGTATPA+  +Q  YPD+YFRIT S+H+ E KEKFRR+C+KS I+KRH+ LTEE+LK+NPN+C
Sbjct:   16 AKKLEGDAKIWAIGTATPANWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSKIRKRHLVLTEELLKKNPNLC 90          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTR (Chalcone synthase B (Fragment) OS=Ipomoea triloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.116e-21
Identity = 47/79 (59.49%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   67 RNAQR--ADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            R A+R   +G A +LAIGTATPA+  +Q  YPD+YFRIT S+H+ E KEKFRR+C+KS I+KRH+ LTEE+L++NP++C
Sbjct:   14 RRAKRFEIEGYAKILAIGTATPANWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSKIRKRHLVLTEELLQKNPSLC 92          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTR (Chalcone synthase A (Fragment) OS=Ipomoea triloba GN=CHSA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.715e-21
Identity = 46/75 (61.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:   73 AQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            A+R +G A +LAIGTATP +  +QA YPD+YFRIT SE + E KEKFRR+C+KS I+ RH+ LTEE+LK++PN+C
Sbjct:   14 AKRFEGHAKLLAIGTATPTNWVDQATYPDFYFRITNSERLLEHKEKFRRICNKSKIRFRHLVLTEELLKKSPNLC 88          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: TBSYN_HYPAN (Trihydroxybenzophenone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.056e-20
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1
Query:   94 ATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKEN 285
            A+VLAIGT  P H   Q DYPD+YFR T SEHMTELKEKF+R+C KS I+KRH +LTEEILKEN
Sbjct:   20 ASVLAIGTTNPEHFILQEDYPDFYFRNTNSEHMTELKEKFKRICVKSHIRKRHFYLTEEILKEN 83          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: BBS_PHASS (Bibenzyl synthase OS=Phalaenopsis sp. GN=BIBSY212 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 41/81 (50.62%), Postives = 59/81 (72.84%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENP 288
            M +++ I+ A RADG A++LAIG A P +   Q+ YPD+YFR+T SEH+ +LK+KF+R+C+K+ I+KRH    EE L  NP
Sbjct:    1 MLSLESIKKAPRADGFASILAIGRANPDNIIEQSAYPDFYFRVTNSEHLVDLKKKFQRICEKTAIRKRHFVWNEEFLTANP 81          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: VPS_PSINU (Phloroisovalerophenone synthase OS=Psilotum nudum GN=VPS PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.860e-18
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   67 RNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNM 294
            R  +RA GP +VLAIG+A P +  +Q+ +PD+YF IT+S HM E+K KF RMC KS IKKR MH+ E+IL+ +P++
Sbjct:   15 RKKERASGPVSVLAIGSANPPNVFHQSLFPDFYFNITQSNHMAEVKAKFTRMCAKSGIKKRRMHINEDILEAHPSI 90          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_PERAE (Chalcone synthase OS=Persea americana GN=CHS PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPD-YYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILK 279
            M  V+ IR  QRA+GPAT++AIGT+TP ++ +Q++YPD YYF    +      +  F+RMC+KSMIKKR+M+LTE   K
Sbjct:    1 MVNVEAIRKVQRAEGPATIMAIGTSTPPNAVDQSEYPDYYYFGSPTASTRPSSRRSFKRMCEKSMIKKRYMYLTETYWK 79          
The following BLAST results are available for this feature:
BLAST of FC876316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHSA_IPOTF3.857e-2361.90Chalcone synthase A (Fragment) OS=Ipomoea trifida ... [more]
CHSA_IPONI6.579e-2361.04Chalcone synthase A (Fragment) OS=Ipomoea nil GN=C... [more]
CHSB_IPOTF1.122e-2263.29Chalcone synthase B (Fragment) OS=Ipomoea trifida ... [more]
CHSB_IPONI1.466e-2261.33Chalcone synthase B (Fragment) OS=Ipomoea nil GN=C... [more]
CHSB_IPOTR2.116e-2159.49Chalcone synthase B (Fragment) OS=Ipomoea triloba ... [more]
CHSA_IPOTR4.715e-2161.33Chalcone synthase A (Fragment) OS=Ipomoea triloba ... [more]
TBSYN_HYPAN3.056e-2071.88Trihydroxybenzophenone synthase OS=Hypericum andro... [more]
BBS_PHASS7.527e-1950.62Bibenzyl synthase OS=Phalaenopsis sp. GN=BIBSY212 ... [more]
VPS_PSINU2.860e-1853.95Phloroisovalerophenone synthase OS=Psilotum nudum ... [more]
CHSY_PERAE1.202e-1650.63Chalcone synthase OS=Persea americana GN=CHS PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC32003C08EF DevOvary1 Citrus clementina cDNA clone C32003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876316 ID=FC876316; Name=FC876316; organism=Citrus clementina; type=EST; length=298bp
ACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAATGGC
AACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCG
TCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGCCAACCAGGCTGAT
TATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGAGCT
TAAAGAGAAGTTCAGGCGCATGTGTGACAAGTCGATGATTAAGAAGCGCC
ACATGCACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGCG
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