FC876316

Overview
NameFC876316
Unique NameFC876316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length298
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:13..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.342e-34
Identity = 64/82 (78.05%), Postives = 76/82 (92.68%), Query Frame = 1
Query:   52 TVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            TV+E+R AQRA+GPATVLAIGTATPA+   QADYPDYYF+ITKS+HM +LKEKF+RMCDKS I+KR+MHLTEEIL++NPNMC
Sbjct:    6 TVEEVRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYMHLTEEILQDNPNMC 87          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS1_SECCE (Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.342e-34
Identity = 64/82 (78.05%), Postives = 76/82 (92.68%), Query Frame = 1
Query:   52 TVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            TV+E+R AQRA+GPATVLAIGTATPA+   QADYPDYYF+ITKS+HM +LKEKF+RMCDKS I+KR+MHLTEEIL++NPNMC
Sbjct:    6 TVEEVRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYMHLTEEILQDNPNMC 87          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_VIGUN (Chalcone synthase OS=Vigna unguiculata GN=CHS PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.283e-34
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTATP +  +Q+ YPDYYFRIT SEHMT+LKEKF+RMCDKSMIKKR+MH+TEEILKENP+MC
Sbjct:    1 MVSVSEIRQAQRAEGPATILAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFQRMCDKSMIKKRYMHVTEEILKENPSMC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS8_IPOBA (Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DIV PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.283e-34
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E+R AQRA+GPAT+LAIGT TPA+  NQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KR+MHLTEEILKENP+ C
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS7_IPOBA (Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-DIII PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.283e-34
Identity = 65/84 (77.38%), Postives = 75/84 (89.29%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E+R A+RA+GPAT+LAIGTATPA+  NQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KR+MHLTEEILKENP+ C
Sbjct:    1 MVTVEEVRKAKRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS3_IPOBA (Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF3 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.283e-34
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV E+R AQRA+GPAT+LAIGTATPA+  NQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KR+MHLTEEILKENP+ C
Sbjct:    1 MVTVGEVRKAQRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS2_IPOBA (Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.283e-34
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E+R AQRA+GPAT+LAIGT TPA+  NQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KR+MHLTEEILKENP+ C
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.283e-34
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M TV+E+R AQRA+GPAT+LAIGT TPA+  NQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KR+MHLTEEILKENP+ C
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_PUELO (Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.082e-33
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M +V EIR AQRA+GPAT+LAIGTA P +  +Q+ YPDYYFRIT SEHMTELKEKF+RMCDKSMIKKR+M+LTEEILKENPNMC
Sbjct:    1 MVSVAEIRQAQRAEGPATILAIGTANPPNCVDQSTYPDYYFRITNSEHMTELKEKFQRMCDKSMIKKRYMYLTEEILKENPNMC 84          
BLAST of FC876316 vs. ExPASy Swiss-Prot
Match: CHSY_CATRO (Chalcone synthase OS=Catharanthus roseus GN=CHS PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.082e-33
Identity = 65/84 (77.38%), Postives = 76/84 (90.48%), Query Frame = 1
Query:   46 MATVQEIRNAQRADGPATVLAIGTATPAHSANQADYPDYYFRITKSEHMTELKEKFRRMCDKSMIKKRHMHLTEEILKENPNMC 297
            M  V+EIRNAQRA GPATVLAIGT+TP++  +Q+ YPDYYFRIT SEH TELKEKF+RMC+KSMIKKR+MHLTEEIL+ENPN+C
Sbjct:    1 MVNVEEIRNAQRAQGPATVLAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCEKSMIKKRYMHLTEEILQENPNIC 84          
The following BLAST results are available for this feature:
BLAST of FC876316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS2_SECCE6.342e-3478.05Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHS1_SECCE6.342e-3478.05Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3... [more]
CHSY_VIGUN8.283e-3477.38Chalcone synthase OS=Vigna unguiculata GN=CHS PE=2... [more]
CHS8_IPOBA8.283e-3477.38Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DI... [more]
CHS7_IPOBA8.283e-3477.38Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-D... [more]
CHS3_IPOBA8.283e-3478.57Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS2_IPOBA8.283e-3477.38Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS1_IPOBA8.283e-3477.38Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
CHSY_PUELO1.082e-3378.57Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 S... [more]
CHSY_CATRO1.082e-3377.38Chalcone synthase OS=Catharanthus roseus GN=CHS PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003C08EF DevOvary1 Citrus clementina cDNA clone C32003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876316 ID=FC876316; Name=FC876316; organism=Citrus clementina; type=EST; length=298bp
ACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAATGGC
AACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCG
TCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGCCAACCAGGCTGAT
TATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGAGCT
TAAAGAGAAGTTCAGGCGCATGTGTGACAAGTCGATGATTAAGAAGCGCC
ACATGCACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGCG
back to top