FC876329

Overview
NameFC876329
Unique NameFC876329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:33..359. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.760e-40
Identity = 76/98 (77.55%), Postives = 85/98 (86.73%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M TV E+R AQ A GPAT++ IGT TP + V+Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKSMIKKRYMYLTEEILKENPN+CAYM PSLD RQD+V
Sbjct:    1 MVTVDEVRKAQRAQGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYMYLTEEILKENPNVCAYMAPSLDTRQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS1_CASGL (Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.760e-40
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M TV+E+R AQ A+GPATVL IGT TP + ++Q+ YPDYYFRIT SEH TELKEKF+RMCDKSMIKKRYMYLTEEILKE+PNMCAYM PSLDARQD+V
Sbjct:    1 MVTVEEVRKAQRAEGPATVLAIGTATPPNCLDQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMIKKRYMYLTEEILKEHPNMCAYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS5_SOYBN (Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.013e-39
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V+EIR AQ A+GPATV+ IGT TP + V+Q+ YPDYYFRIT SEHMTELKEKFKRMCDKSMIKKRYMYL EEILKENP++CAYM PSLDARQD+V
Sbjct:    1 MVSVEEIRQAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS2_SOYBN (Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.013e-39
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V+EIR AQ A+GPATV+ IGT TP + V+Q+ YPDYYFRIT SEHMTELKEKFKRMCDKSMIKKRYMYL EEILKENP++CAYM PSLDARQD+V
Sbjct:    1 MVSVEEIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.013e-39
Identity = 76/96 (79.17%), Postives = 87/96 (90.62%), Query Frame = 2
Query:   32 TVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            TV+E+R AQ A+GPATVL IGT TPA+ V QADYPDYYF+ITKS+HM +LKEKFKRMCDKS I+KRYM+LTEEIL++NPNMCAYM PSLDARQDIV
Sbjct:    6 TVEEVRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYMHLTEEILQDNPNMCAYMAPSLDARQDIV 101          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS1_SOYBN (Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.013e-39
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V+EIR AQ A+GPATV+ IGT TP + V+Q+ YPDYYFRIT SEHMTELKEKFKRMCDKSMIKKRYMYL EEILKENP++CAYM PSLDARQD+V
Sbjct:    1 MVSVEEIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS1_SECCE (Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.013e-39
Identity = 76/96 (79.17%), Postives = 87/96 (90.62%), Query Frame = 2
Query:   32 TVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            TV+E+R AQ A+GPATVL IGT TPA+ V QADYPDYYF+ITKS+HM +LKEKFKRMCDKS I+KRYM+LTEEIL++NPNMCAYM PSLDARQDIV
Sbjct:    6 TVEEVRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYMHLTEEILQDNPNMCAYMAPSLDARQDIV 101          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.324e-39
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M TV+E+R AQ A+GPATVL IGT TPA+ V+Q+ YPDYYFRIT SEHMTELKEKFKRMCDKS IK+RYM+LTEEILKENP MC YM PSLDARQDIV
Sbjct:    1 MVTVEEVRRAQRAEGPATVLAIGTATPANCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSNIKRRYMHLTEEILKENPAMCEYMAPSLDARQDIV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.324e-39
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M TV+E+R AQ A GPAT++ IGT TP++ V+Q+ YPDYYFRIT SEHMTELKEKFKRMCDKSMI KRYM+LTEEILKENPN+C YM PSLDARQDIV
Sbjct:    1 MVTVEEVRKAQRAKGPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMINKRYMHLTEEILKENPNICEYMAPSLDARQDIV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS2_SOLLC (Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.324e-39
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M TV+E+R AQ A GPAT++ IGT TP++ V+Q+ YPDYYFRIT SEHMTELKEKFKRMCDKSMI KRYM+LTEEILKENPN+C YM PSLDARQDIV
Sbjct:    1 MVTVEEVRRAQRAKGPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMINKRYMHLTEEILKENPNICEYMAPSLDARQDIV 98          
The following BLAST results are available for this feature:
BLAST of FC876329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS1_CITSI7.760e-4077.55Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHS1_CASGL7.760e-4078.57Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2... [more]
CHS5_SOYBN1.013e-3978.57Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV... [more]
CHS2_SOYBN1.013e-3978.57Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV... [more]
CHS2_SECCE1.013e-3979.17Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHS1_SOYBN1.013e-3978.57Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV... [more]
CHS1_SECCE1.013e-3979.17Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3... [more]
CHSY_ANTMA1.324e-3979.59Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]
CHS2_SOLTU1.324e-3977.55Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P... [more]
CHS2_SOLLC1.324e-3977.55Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS... [more]

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Properties
Property NameValue
Genbank descriptionC32003D12EF DevOvary1 Citrus clementina cDNA clone C32003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876329 ID=FC876329; Name=FC876329; organism=Citrus clementina; type=EST; length=327bp
ATATTCATTAAGGGTTCAACTTGAAATGGCTACCGTTCAAGAGATCAGAA
ACGCTCAGTGAGCCGACGGTCCGGCCACCGTCCTCGGCATCGGTACGGAC
ACGCCTGCCCACAGTGTCAACCAAGCTGATTATCCCGACTATTACTTCAG
GATCACAAAGAGCGAGCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCA
TGTGTGACAAGTCGATGATTAAGAAGCGTTACATGTACTTAACGGAAGAG
ATTTTGAAGGAAAACCCCAACATGTGCGCTTACATGGATCCATCACTCGA
CGCACGTCAAGACATTGTGGCGGGCGA
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