FC876329

Overview
NameFC876329
Unique NameFC876329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:33..359. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.030e-37
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V EIR AQ A+GPAT+L IGT  PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEILKENP++C YM PSLDARQD+V
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS3_CAMSI (Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.030e-37
Identity = 74/98 (75.51%), Postives = 82/98 (83.67%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M TV+++  AQ A GPATVL IGT TP + V+Q+ YPDYYFRIT SEH  ELKEKFKRMCDKSMIKKRYMYLTEEILKENP +C YM PSLDARQD+V
Sbjct:    1 MVTVEDVWRAQRARGPATVLAIGTATPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCDKSMIKKRYMYLTEEILKENPLVCEYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.049e-36
Identity = 71/97 (73.20%), Postives = 83/97 (85.57%), Query Frame = 2
Query:   29 ATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            A ++EIRN Q A GPA +L IGT TP++ V QADYPDYYFRIT SEHMT+LK KFKRMC+KSMI+KRYM++TEE LKENPN+CAY  PSLDARQD+V
Sbjct:    7 AEIEEIRNRQRAQGPANILAIGTATPSNCVYQADYPDYYFRITNSEHMTDLKLKFKRMCEKSMIRKRYMHITEEYLKENPNVCAYEAPSLDARQDLV 103          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.049e-36
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = 2
Query:   35 VQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            +  IR AQ   GPAT+L IGT TP++ V QADYPDYYFRITKSEHM +LKEKFKRMCDKSMI+KRYM+LTEE LKENP++C YM PSLDARQD+V
Sbjct:    7 IAAIREAQRRQGPATILAIGTATPSNCVYQADYPDYYFRITKSEHMVDLKEKFKRMCDKSMIRKRYMHLTEEYLKENPSLCEYMAPSLDARQDVV 101          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS5_TRISU (Chalcone synthase 5 OS=Trifolium subterraneum GN=CHS5 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.049e-36
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V EIR AQ A+GPAT+L IGT  PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEILKENP++C YM PSLDARQD+V
Sbjct:    1 MVSVAEIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS2_TRISU (Chalcone synthase 2 OS=Trifolium subterraneum GN=CHS2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.049e-36
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V EIR AQ A+GPAT+L IGT  PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEILKENP++C YM PSLDARQD+V
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANRVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS5_PEA (Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.370e-36
Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V EIR AQ A+GPAT+L IGT  PA+ V Q+ YPD+YFRIT SEH TELK+KF+RMCDKSMI +RYMYLTEEILKENP++C YM PSLDARQD+V
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKTELKQKFQRMCDKSMINRRYMYLTEEILKENPSVCEYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS3_PEA (Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.370e-36
Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M +V EIR AQ A+GPAT+L IGT  PA+ V Q+ YPD+YFRIT SEH TELK+KF+RMCDKSMI +RYMYLTEEILKENP++C YM PSLDARQD+V
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKTELKQKFQRMCDKSMINRRYMYLTEEILKENPSVCEYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHS2_PEA (Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.370e-36
Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M TV EIR AQ A+GPAT+L IGT  PA+ V Q+ YPD+YF+IT SEH T LKEKF+RMCDKSMIK+RYMYLTE+ILKENP++C YM PSLDARQD+V
Sbjct:    1 MVTVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYMYLTEDILKENPSLCEYMAPSLDARQDMV 98          
BLAST of FC876329 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.336e-36
Identity = 70/98 (71.43%), Postives = 83/98 (84.69%), Query Frame = 2
Query:   26 MATVQEIRNAQ*ADGPATVLGIGTDTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMDPSLDARQDIV 319
            M TV+E+R AQ A+GPAT+L IGT TP + V+Q+ YPD+YFR+T SEH  ELK KF+RMCD S IKKRYM+LTEEILKENPN+CAYM PSLDARQD+V
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPPNYVDQSTYPDFYFRVTNSEHKKELKAKFQRMCDNSQIKKRYMHLTEEILKENPNICAYMAPSLDARQDMV 98          
The following BLAST results are available for this feature:
BLAST of FC876329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS4_TRISU8.030e-3773.47Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
CHS3_CAMSI8.030e-3775.51Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 P... [more]
CHSY_PETCR1.049e-3673.20Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHSY_CALCH1.049e-3674.74Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHS5_TRISU1.049e-3673.47Chalcone synthase 5 OS=Trifolium subterraneum GN=C... [more]
CHS2_TRISU1.049e-3673.47Chalcone synthase 2 OS=Trifolium subterraneum GN=C... [more]
CHS5_PEA1.370e-3672.45Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 ... [more]
CHS3_PEA1.370e-3672.45Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 ... [more]
CHS2_PEA1.370e-3672.45Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 ... [more]
CHSY_HYDMC2.336e-3671.43Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]

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Properties
Property NameValue
Genbank descriptionC32003D12EF DevOvary1 Citrus clementina cDNA clone C32003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876329 ID=FC876329; Name=FC876329; organism=Citrus clementina; type=EST; length=327bp
ATATTCATTAAGGGTTCAACTTGAAATGGCTACCGTTCAAGAGATCAGAA
ACGCTCAGTGAGCCGACGGTCCGGCCACCGTCCTCGGCATCGGTACGGAC
ACGCCTGCCCACAGTGTCAACCAAGCTGATTATCCCGACTATTACTTCAG
GATCACAAAGAGCGAGCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCA
TGTGTGACAAGTCGATGATTAAGAAGCGTTACATGTACTTAACGGAAGAG
ATTTTGAAGGAAAACCCCAACATGTGCGCTTACATGGATCCATCACTCGA
CGCACGTCAAGACATTGTGGCGGGCGA
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