FC876456

Overview
NameFC876456
Unique NameFC876456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10364 contig Ccv1_Contig10364:1..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDI_DROME (Protein disulfide-isomerase OS=Drosophila melanogaster GN=Pdi PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFA-LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVE 415
            VLVEFYAPWCGHCK LAP Y K A   A  E  + +A +DA    +LAE+Y V G+PTLKFF  G+    EY GGR   D ++++ +K G        +      +   +  +  F      E+   F+K+   ++
Sbjct:   47 VLVEFYAPWCGHCKALAPEYAKAAQQLAEKESPIKLAKVDATVEGELAEQYAVRGYPTLKFFRSGSP--VEYSGGRQAADIIAWVTKKTGPPAKDLTSVADAEQFLKDNEIAIIGFFKDLESEEAKTFTKVANALD 180          

HSP 2 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 265
            VLVEFYAPWCGHCK LAP Y+++A  +   +D+V+A +D+   +   E   +S FPT+K+F K +    ++   R L+DFV F++
Sbjct:  388 VLVEFYAPWCGHCKQLAPIYDQLAEKYKDNEDIVIAKMDSTANE--LESIKISSFPTIKYFRKEDNKVIDFNLDRTLDDFVKFLD 470          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDI2_CAEEL (Protein disulfide-isomerase 2 OS=Caenorhabditis elegans GN=pdi-2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 46/136 (33.82%), Postives = 73/136 (53.68%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALE-DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVE 415
            +LVEFYAPWCGHCK+LAP Y K A     E  D+ +  LDA  + +++ K+ V G+PTLK F  G    +EY GGRD +  ++++ +K G          +   +  S D +V  +   +  +    F ++  G++
Sbjct:   43 ILVEFYAPWCGHCKSLAPEYAKAATQLKEEGSDIKLGKLDATVHGEVSSKFEVRGYPTLKLFRNGKP--QEYNGGRDHDSIIAWLKKKTGPVAKPLADADAVKELQESADVVVIGYFKDTTSDDAKTFLEVAAGID 176          

HSP 2 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI----NEKCGTSRDGKGQ 301
            VLVEFYAPWCGHCK LAPT++K+   FA ++ +V+A +D+   +   E   +  FPT+KFFP G+    +Y G R +E F  F+     E  G S + K +
Sbjct:  384 VLVEFYAPWCGHCKQLAPTWDKLGEKFADDESIVIAKMDSTLNE--VEDVKIQSFPTIKFFPAGSNKVVDYTGDRTIEGFTKFLETNGKEGAGASEEEKAE 482          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDI_MAIZE (Protein disulfide-isomerase OS=Zea mays GN=PDI PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.647e-18
Identity = 61/186 (32.80%), Postives = 96/186 (51.61%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALED-DVVVANLDA--DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG-TSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAK 556
            ++VEFYAPWCGHCK LAP YE  A A +  D  +V+A +DA  +K + LA KY + GFPT+K F    K+ +EY G R+ +  V ++ ++ G  S++ K    +TA I      +V  F   SG E    F+      E L         ++     N++ +G    ++ + RL +  D+ +  +K
Sbjct:   54 MVVEFYAPWCGHCKKLAPEYENAAKALSKHDPPIVLAKVDANEEKNRPLATKYEIQGFPTIKIFRDRGKNIQEYKGPREADGIVDYLKKQVGPASKEIKSPEDATALIDDKKIYIVGIFAEFSGTE----FTNFMEVAEKLRSDYDFGHTLH----ANHLPRGDAAVERPLVRLLKPFDELVVDSK 231          

HSP 2 Score: 80.1073 bits (196), Expect = 7.969e-15
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 2
Query:    2 GTRVLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 283
            G  VL+EFYAPWCGHCK LAP  ++ A     +++VV+A +DA    D+  ++ V G+PTL F     K    Y  GR  +D V FI +   T+
Sbjct:  396 GKNVLIEFYAPWCGHCKKLAPILDEAATTLQSDEEVVIAKMDATA-NDVPSEFDVQGYPTLYFVTPSGK-VTSYDSGRTADDIVDFIKKSKETA 487          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDI1_ARATH (Probable protein disulfide-isomerase 1 OS=Arabidopsis thaliana GN=At1g21750 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALE-DDVVVANLDA--DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 277
            ++VEFYAPWCGHCK LAP YEK A+A +     VV+A +DA  +  ++ A +Y V GFPT+K F  G K  +EY G R+ E  V+++ ++ G
Sbjct:   50 IVVEFYAPWCGHCKQLAPEYEKAASALSSNVPPVVLAKIDASEETNREFATQYEVQGFPTIKIFRNGGKAVQEYNGPREAEGIVTYLKKQSG 141          

HSP 2 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 2
Query:    2 GTRVLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTST 313
            G  VL+EFYAPWCGHC+ LAP  ++VA ++  +  VV+A LDA       + + V GFPT+ +F   + +   Y G R  EDF+SF+++   T  + K +  +T
Sbjct:  392 GKNVLLEFYAPWCGHCQKLAPILDEVAVSYQSDSSVVIAKLDATANDFPKDTFDVKGFPTI-YFKSASGNVVVYEGDRTKEDFISFVDKNKDTVGEPKKEEETT 494          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA3_CHICK (Protein disulfide-isomerase A3 OS=Gallus gallus GN=PDIA3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEK 271
            VL+EFYAPWCGHCKNL P Y+++    + + ++V+A +DA    D+   Y V GFPT+ F P G K   ++Y GGR++ DF+S++  +
Sbjct:  395 VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPSPYEVRGFPTIYFAPAGKKQSPKKYEGGREVSDFISYLKRE 481          

HSP 2 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 51/122 (41.80%), Postives = 65/122 (53.28%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVA-ASGD 373
            VLVEF+APWCGHCK LAP YE  AAA  L+  V +  +D     +   KYGVSG+PTLK F  G + G  Y G R  +  VS + ++ G +      +      +   DA V  F   ASGD
Sbjct:   46 VLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLVKVDCTANSNTCNKYGVSGYPTLKIFRDGEESG-TYDGPRTADGIVSHLKKQAGPASVALSSVADFEKFIGDKDASVVGFFRDASGD 164          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDI1_SCHPO (Putative protein disulfide-isomerase C1F5.02 OS=Schizosaccharomyces pombe GN=SPAC1F5.02 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINE 268
            VLVEFYAPWCGHCKNLAPTYEK+A  ++ + +VVVA +DA +  D++    +SGFPT+ FF   +K +   Y G R LED  +FI++
Sbjct:  376 VLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATE-NDIS--VSISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDK 459          

HSP 2 Score: 70.4774 bits (171), Expect = 6.314e-12
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 271
            ++V+FYAPWCGHCK LAP YE  A     +D + +  +D  +  DL  +Y + G+PTL  F K  K   +Y G R  +  V ++ ++
Sbjct:   42 LMVKFYAPWCGHCKALAPEYESAADELE-KDGISLVEVDCTEEGDLCSEYSIRGYPTLNVF-KNGKQISQYSGPRKHDALVKYMRKQ 126          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDI_DATGL (Protein disulfide-isomerase OS=Datisca glomerata GN=PDI PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.716e-17
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALED-DVVVANLDADK--YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 277
            ++VEFYAPWCGHCK LAP YEK A+  +  D  V++A +DA++   K+LA ++ V GFPT+K    G K  +EY G RD +  V ++ ++ G
Sbjct:   53 IVVEFYAPWCGHCKKLAPEYEKAASILSSHDPPVILAKVDANEEANKELASEFEVRGFPTIKILRNGGKIVQEYKGPRDADGIVDYLKKQSG 144          

HSP 2 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 2
Query:    2 GTRVLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 268
            G  VL+EFYAPWCGHCK LAP  ++VA +F  + DV++A LDA         + V G+PTL +F   + +  +Y GGR  EDF+ FI +
Sbjct:  395 GKNVLLEFYAPWCGHCKQLAPILDEVAVSFENDPDVLIAKLDATANDYPTNTFDVKGYPTL-YFKSASGELLQYDGGRTKEDFIEFIEK 482          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA3_PONAB (Protein disulfide-isomerase A3 OS=Pongo abelii GN=PDIA3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEK 271
            VL+EFYAPWCGHCKNL P Y+++    + + ++V+A +DA    D+   Y V GFPT+ F P   K + ++Y GGR+L DF+S++  +
Sbjct:  397 VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQRE 483          

HSP 2 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 50/129 (38.76%), Postives = 67/129 (51.94%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSK 397
            +LVEF+APWCGHCK LAP YE  AAA  L+  V +A +D     +   KYGVSG+PTLK F  G + G  Y G R  +  VS + ++ G +             ++  DA +  F   S  E  + F K
Sbjct:   48 MLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAG-AYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLK 173          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA3_HUMAN (Protein disulfide-isomerase A3 OS=Homo sapiens GN=PDIA3 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEK 271
            VL+EFYAPWCGHCKNL P Y+++    + + ++V+A +DA    D+   Y V GFPT+ F P   K + ++Y GGR+L DF+S++  +
Sbjct:  397 VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQRE 483          

HSP 2 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 50/129 (38.76%), Postives = 67/129 (51.94%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSK 397
            +LVEF+APWCGHCK LAP YE  AAA  L+  V +A +D     +   KYGVSG+PTLK F  G + G  Y G R  +  VS + ++ G +             ++  DA +  F   S  E  + F K
Sbjct:   48 MLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAG-AYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLK 173          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA3_CERAE (Protein disulfide-isomerase A3 OS=Cercopithecus aethiops GN=PDIA3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEK 271
            VL+EFYAPWCGHCKNL P Y+++    + + ++V+A +DA    D+   Y V GFPT+ F P   K + ++Y GGR+L DF+S++  +
Sbjct:  397 VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQRE 483          

HSP 2 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 277
            +LVEF+APWCGHCK LAP YE  AAA  L+  V +A +D     +   KYGVSG+PTLK F  G + G  Y G R  +  VS + ++ G
Sbjct:   48 MLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAG-AYDGPRTADGIVSHLKKQAG 133          
The following BLAST results are available for this feature:
BLAST of FC876456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PDI_DROME9.097e-1936.76Protein disulfide-isomerase OS=Drosophila melanoga... [more]
PDI2_CAEEL2.026e-1833.82Protein disulfide-isomerase 2 OS=Caenorhabditis el... [more]
PDI_MAIZE2.647e-1832.80Protein disulfide-isomerase OS=Zea mays GN=PDI PE=... [more]
PDI1_ARATH4.515e-1846.74Probable protein disulfide-isomerase 1 OS=Arabidop... [more]
PDIA3_CHICK7.701e-1844.32Protein disulfide-isomerase A3 OS=Gallus gallus GN... [more]
PDI1_SCHPO7.701e-1852.87Putative protein disulfide-isomerase C1F5.02 OS=Sc... [more]
PDI_DATGL1.716e-1745.65Protein disulfide-isomerase OS=Datisca glomerata G... [more]
PDIA3_PONAB2.241e-1744.32Protein disulfide-isomerase A3 OS=Pongo abelii GN=... [more]
PDIA3_HUMAN2.241e-1744.32Protein disulfide-isomerase A3 OS=Homo sapiens GN=... [more]
PDIA3_CERAE2.241e-1744.32Protein disulfide-isomerase A3 OS=Cercopithecus ae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CA03RM1 EHR Citrus clementina cDNA clone KN0AAN2CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876456 ID=FC876456; Name=FC876456; organism=Citrus clementina; type=EST; length=558bp
CGGCACGAGGGTTTTGGTTGAATTTTATGCACCATGGTGTGGCCATTGCA
AAAACCTTGCGCCTACATATGAAAAGGTGGCAGCCGCATTTGCATTGGAA
GATGATGTAGTCGTTGCTAATTTGGATGCTGACAAATACAAGGATCTGGC
TGAGAAGTATGGAGTTAGTGGATTTCCTACATTGAAGTTCTTTCCAAAAG
GCAACAAAGATGGTGAGGAATATGGGGGTGGCAGAGATTTGGAAGACTTT
GTTTCTTTCATCAATGAAAAATGTGGCACCAGTCGTGATGGAAAAGGACA
ACTTACTTCAACGGCGGGTATAGTTGCGAGCTTAGATGCCTTGGTGAAGG
AATTTGTTGCTGCTAGCGGTGATGAGAAGAAGGCAGTCTTCTCAAAGATT
GAACGGGGAGTTGAGGTGCTTGAGGGTTCCACTGCCAGGCATGGGAAGAT
TTACTTGAAAGTTGCAAAGAACTATATGGACAAAGGGAGTGATTATGCGA
AAAAGGAAATTGATCGCCTCCAGCGTATGCTTGACAAGTCAATCAGCGCG
GCAAAAGC
back to top