FC876456

Overview
NameFC876456
Unique NameFC876456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10364 contig Ccv1_Contig10364:1..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA5_HUMAN (Protein disulfide-isomerase A5 OS=Homo sapiens GN=PDIA5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDV--VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 208
            VLV F+APWCGHCK + P +EK A A   E D   V+A +DA   K LAE++ +S FPTLK+F  G K
Sbjct:  296 VLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNGEK 363          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: TXND_THEPA (Thioredoxin domain-containing protein OS=Theileria parva GN=TP02_0602 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.314e-12
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 2
Query:   17 VEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVF 391
            V+FYAPWC HC+ +AP +E +A   AL+  V VA++D  +  +L +++ + G+PTL  F KG K  +  GG R +E    F         D K  + +      SL ALV +FV +  +E   V+
Sbjct:   57 VKFYAPWCSHCRKMAPAWESLAK--ALKGQVNVADVDVTRNLNLGKRFQIRGYPTLLLFHKG-KMYQYEGGERTVEKLSEF------ALGDFKNAVGAPVPQPLSLFALVSDFVVSGVNEALRVY 172          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: TMX3_MOUSE (Protein disulfide-isomerase TMX3 OS=Mus musculus GN=Tmx3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.247e-12
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAF-ALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 277
            LV+FYAPWCGHCK L P + +V     ++   V V  +DA  Y  +A ++GV G+PT+K   KG+     Y G R  +D + F +   G
Sbjct:   48 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLL-KGDL-AYNYRGPRTKDDIIEFAHRVSG 134          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: TMX3_HUMAN (Protein disulfide-isomerase TMX3 OS=Homo sapiens GN=TMX3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.247e-12
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAF-ALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 277
            LV+FYAPWCGHCK L P + +V     ++   V V  +DA  Y  +A ++GV G+PT+K   KG+     Y G R  +D + F +   G
Sbjct:   45 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLL-KGDL-AYNYRGPRTKDDIIEFAHRVSG 131          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: YEU5_SCHPO (Thioredoxin domain-containing protein C13F5.05, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC13F5.05 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.077e-11
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK----DGEEYGGGRDLEDFVSFINE 268
            LV FYAPWCG+CK L PTY+K+A+       V   + DAD+ + +  +Y V GFPT+K     +K       +Y G R  +    F+++
Sbjct:   52 LVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSD 140          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: MPD1_YEAST (Protein disulfide-isomerase MPD1 OS=Saccharomyces cerevisiae GN=MPD1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.407e-11
Identity = 40/98 (40.82%), Postives = 44/98 (44.90%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD----------------GEEYGGGRDLEDFVSF 259
            LVEFYAPWCGHCK L+ T+ K A        V   N D +K K L  KY V+GFPTL  F     D                 E Y G R L   V F
Sbjct:   51 LVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDF 148          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: TMX3_PONAB (Protein disulfide-isomerase TMX3 OS=Pongo abelii GN=TMX3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAF-ALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 277
            LV+FYAPWCGHCK L P + +V     ++   V V  +DA  Y  +A ++GV G+PT+K   KG+     + G R  +D + F +   G
Sbjct:   45 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLL-KGDL-AYNHRGPRTKDDIIEFAHRVSG 131          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA5_BOVIN (Protein disulfide-isomerase A5 OS=Bos taurus GN=PDIA5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.093e-11
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDV--VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 208
            VLV F+APWCGHCK + P +E  A     E D   V+A +DA   K LAE++ ++ FPTLK+F  G K
Sbjct:  298 VLVMFHAPWCGHCKKMKPEFESAAEVLHGEGDSSGVLAAVDATVNKALAERFHIAEFPTLKYFKNGEK 365          
The following BLAST results are available for this feature:
BLAST of FC876456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PDIA5_HUMAN2.170e-1252.94Protein disulfide-isomerase A5 OS=Homo sapiens GN=... [more]
TXND_THEPA6.314e-1235.20Thioredoxin domain-containing protein OS=Theileria... [more]
TMX3_MOUSE8.247e-1239.33Protein disulfide-isomerase TMX3 OS=Mus musculus G... [more]
TMX3_HUMAN8.247e-1239.33Protein disulfide-isomerase TMX3 OS=Homo sapiens G... [more]
YEU5_SCHPO1.077e-1137.08Thioredoxin domain-containing protein C13F5.05, mi... [more]
MPD1_YEAST1.407e-1140.82Protein disulfide-isomerase MPD1 OS=Saccharomyces ... [more]
TMX3_PONAB3.134e-1138.20Protein disulfide-isomerase TMX3 OS=Pongo abelii G... [more]
PDIA5_BOVIN4.093e-1148.53Protein disulfide-isomerase A5 OS=Bos taurus GN=PD... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA03RM1 EHR Citrus clementina cDNA clone KN0AAN2CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876456 ID=FC876456; Name=FC876456; organism=Citrus clementina; type=EST; length=558bp
CGGCACGAGGGTTTTGGTTGAATTTTATGCACCATGGTGTGGCCATTGCA
AAAACCTTGCGCCTACATATGAAAAGGTGGCAGCCGCATTTGCATTGGAA
GATGATGTAGTCGTTGCTAATTTGGATGCTGACAAATACAAGGATCTGGC
TGAGAAGTATGGAGTTAGTGGATTTCCTACATTGAAGTTCTTTCCAAAAG
GCAACAAAGATGGTGAGGAATATGGGGGTGGCAGAGATTTGGAAGACTTT
GTTTCTTTCATCAATGAAAAATGTGGCACCAGTCGTGATGGAAAAGGACA
ACTTACTTCAACGGCGGGTATAGTTGCGAGCTTAGATGCCTTGGTGAAGG
AATTTGTTGCTGCTAGCGGTGATGAGAAGAAGGCAGTCTTCTCAAAGATT
GAACGGGGAGTTGAGGTGCTTGAGGGTTCCACTGCCAGGCATGGGAAGAT
TTACTTGAAAGTTGCAAAGAACTATATGGACAAAGGGAGTGATTATGCGA
AAAAGGAAATTGATCGCCTCCAGCGTATGCTTGACAAGTCAATCAGCGCG
GCAAAAGC
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