FC876463

Overview
NameFC876463
Unique NameFC876463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10428 contig Ccv1_Contig10428:2..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: STA_RICCO (Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 62/238 (26.05%), Postives = 98/238 (41.18%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAV---GTIVGIYLIDHFGRKKLALSS----LAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSSTV 714
            WR  LG++A PA++  +  L +PE+P  L  +   EK   VL KI     ++ E   +  A+E     K   R +     K  R                 IN +++Y+P + Q  GF  N            T AV    T + I  +D  GR+ L +S     +   +I  ++L   F           +  + VI + L++  F    GP+ WT+ SE++P + R    G S TV
Sbjct:  203 WRLSLGLAAAPALLMTIGGLLLPETPNSLIEQGLHEKGRNVLEKIRGTKHVDAEFQDMLDASELANSIKHPFRNI---LEKRNRPQLVMAIFMPTFQILTGINIILFYAPPLFQSMGFGGNAALYSSAV----TGAVLCSSTFISIATVDRLGRRFLLISGGIQMITCQVIVAIILGVKF--GDNQQLSKSFSVLVVIMICLFVLAFGWSWGPLGWTVPSEIFPLETRS--AGQSITV 429          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR7_RAT (Solute carrier family 2, facilitated glucose transporter member 7 OS=Rattus norvegicus GN=Slc2a7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 58/232 (25.00%), Postives = 100/232 (43.10%), Query Frame = 1
Query:    7 GVPGTWRWMLGVSAVPAIIHFVLMLFMPESPRW-LFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSL-----AGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR 684
            G P  W  +L ++ VPA++  + + F PESPR+ L  K D+  A   L ++     +E E++ + A A  E R +  +  L +   + +R                 IN V YY+ TI   AG ++              N V TI    L++  GR+ L L+       A +++++VLL                 ++ +I +  YIA  + G  PVP  + +E++ +  R
Sbjct:  193 GNPAGWPVLLALTGVPALLQLLTLPFFPESPRYSLIQKGDEATARQALRRLRGHTDMEAELEDMRAEARAE-RAEGHLSVLHLCALRSLRWQLLSIIVLMAGQQLSGINAVNYYADTIYTSAGVEAAHSQYVTVGSGV-VNIVMTITSAVLVERLGRRHLLLAGYGICGSACLVLTVVLL--------FQNRVPELSYLGIICVFAYIAGHSIGPSPVPPVVRTEIFLQSSR 414          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR7_HUMAN (Solute carrier family 2, facilitated glucose transporter member 7 OS=Homo sapiens GN=SLC2A7 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 57/232 (24.57%), Postives = 100/232 (43.10%), Query Frame = 1
Query:    7 GVPGTWRWMLGVSAVPAIIHFVLMLFMPESPRW-LFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSL-----AGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR 684
            G P  W  +L ++ VPA++  + + F PESPR+ L  K D+  A   L ++     +E E++ + A A  E R +  +  L +   + +R                 IN + YY+ TI   AG ++              N V TI    L++  GR+ L L+       A +++++VLL                 ++ +I +  YIA  + G  PVP  + +E++ +  R
Sbjct:  193 GNPAGWPVLLALTGVPALLQLLTLPFFPESPRYSLIQKGDEATARQALRRLRGHTDMEAELEDMRAEARAE-RAEGHLSVLHLCALRSLRWQLLSIIVLMAGQQLSGINAINYYADTIYTSAGVEAAHSQYVTVGSGV-VNIVMTITSAVLVERLGRRHLLLAGYGICGSACLVLTVVLL--------FQNRVPELSYLGIICVFAYIAGHSIGPSPVPSVVRTEIFLQSSR 414          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR5_RAT (Solute carrier family 2, facilitated glucose transporter member 5 OS=Rattus norvegicus GN=Slc2a5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 51/227 (22.47%), Postives = 100/227 (44.05%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV---FKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVG---TIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR 684
            W  +LG++ VPA +  +L+ F PESPR+L ++   E A     K     R   ++D       +E   +K   ++ V   F+ + +R                 +N + YY+  I   AG +SN           GT AV    T+V +++++ +GR+ L L   +  + + ++L+ A              +++++ + +Y+   A G  P+P    +E++ +  R
Sbjct:  191 WPILLGLTGVPAGLQLLLLPFFPESPRYLLIQKKNESA---AEKALQTLRGWKDVDMEMEEIRKEDEAEKAAGFISVWKLFRMQSLRWQLISTIVLMAGQQLSGVNAIYYYADQIYLSAGVKSND----VQYVTAGTGAVNVFMTMVTVFVVELWGRRNLLLIGFSTCLTACIVLTVALALQNTISWMP---YVSIVCVIVYVIGHAVGPSPIPALFITEIFLQSSR 407          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR5_PONAB (Solute carrier family 2, facilitated glucose transporter member 5 OS=Pongo abelii GN=SLC2A5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 51/224 (22.77%), Postives = 94/224 (41.96%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV---FKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR 684
            W  +LG++ VPA +  VL+ F PESPR+L ++   E A     K     R  D +D   A   +E   +K   ++ V   F+ + +R                 +N + YY+  I   AG    +            N V T   +++++  GR+ L L   +  +++  +L+ A              +I+++ +  Y+   A G  P+P  L +E++ +  R
Sbjct:  192 WPILLGLTGVPAALQLVLLPFFPESPRYLLIQKKDEAA---AKKALQTLRGWDSVDREVAEIRQEDEAEKAAGFISVLKLFRMRSLRWQLLSIIVLMGGQQLSGVNAIYYYADQIYLSAGV-PKEHVQFVTAGTGAVNVVMTFCAVFVVELLGRRLLLLLGFSICLVACCVLTAALALQDTVSWMP---YISIVCVISYVIGHALGPSPIPALLITEIFLQSSR 408          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR12_XENLA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Xenopus laevis GN=slc2a12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 44/168 (26.19%), Postives = 77/168 (45.83%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKE-IRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLV 522
            W++M G+    A +  V M F+P SPR+L MK   + A  VL K+     + +E+  + ++ + E + K    +LD+F S++ +R                    +++Y+ T+++  GFQS +              V TI  I+L+D  G K       A + +SLV
Sbjct:  190 WKYMFGLITPLAALQAVAMFFLPRSPRFLIMKGYDDAAGKVLQKLRATTDINEELTAIKSSIKAEYQYK----FLDLFCSRDNMRARLLIGLTLSFFVQITGQPNILFYASTVLKSVGFQSTEAASLASTGIGVVKVVSTIPAIFLVDKIGSKTFLCIGSAVMAVSLV 353          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR12_MOUSE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Mus musculus GN=Slc2a12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 40/153 (26.14%), Postives = 73/153 (47.71%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKE-IRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRK 477
            W++M G+     ++  + M F+P SPR+L MK  +E A  VL K+  I+   +E+  + ++ ++E +      + D+F+SK+ +R                    +++Y+ T+++  GFQSN+              V TI    L+DH G K
Sbjct:  200 WKYMFGLVIPLGVLQAIAMYFLPPSPRFLVMKGQEESAGKVLRKLRVISDTTEELTLIKSSLKDEYQ----YSFWDLFRSKDNMRTRILIGLTLVFFVQTTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVVSTIPATLLVDHIGSK 348          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: ERDL2_ARATH (Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 56/243 (23.05%), Postives = 98/243 (40.33%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAE-----EELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVG------TIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSSTVN 717
            WR +  +SA+P+    + + F+PESPRWL M    ++  + L K+       +  D L  AAE     E  RK+      D+F                          +  Y+  I   AGF S+           GT  +       +IV +  +D +GR+ L + S  G+ I    +  ++          +   + ++GL  Y++ F  G+G +PW + SE++P   +   G + +  N
Sbjct:  176 WRTLALLSAIPSAFQVICLFFIPESPRWLAMYGQDQELEVSLKKLRG-----ENSDILKEAAEIRETVEISRKESQSGIRDLFHIGNAHSLIIGLGLMLLQQFCGSA-AISAYAARIFDKAGFPSD----------IGTTILAVILIPQSIVVMLTVDRWGRRPLLMISSIGMCICSFFIGLSYYLQKNGEFQKLCSVMLIVGLVGYVSSFGIGLGGLPWVIMSEIFPVNVKITAGSLVTMSN 402          
The following BLAST results are available for this feature:
BLAST of FC876463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
STA_RICCO3.933e-1126.05Sugar carrier protein A OS=Ricinus communis GN=STA... [more]
GTR7_RAT3.933e-1125.00Solute carrier family 2, facilitated glucose trans... [more]
GTR7_HUMAN3.933e-1124.57Solute carrier family 2, facilitated glucose trans... [more]
GTR5_RAT6.708e-1122.47Solute carrier family 2, facilitated glucose trans... [more]
GTR5_PONAB6.708e-1122.77Solute carrier family 2, facilitated glucose trans... [more]
GTR12_XENLA6.708e-1126.19Solute carrier family 2, facilitated glucose trans... [more]
GTR12_MOUSE6.708e-1126.14Solute carrier family 2, facilitated glucose trans... [more]
ERDL2_ARATH6.708e-1123.05Sugar transporter ERD6-like 2 OS=Arabidopsis thali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CA12RM1 EHR Citrus clementina cDNA clone KN0AAN2CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876463 ID=FC876463; Name=FC876463; organism=Citrus clementina; type=EST; length=717bp
GCACGAGGGGTCCCTGGAACATGGAGATGGATGCTTGGAGTATCAGCTGT
GCCAGCTATCATTCACTTTGTCTTAATGCTTTTTATGCCGGAGTCTCCTA
GATGGCTTTTCATGAAGAGTGACAAAGAAAAAGCCATTTTGGTTCTTTCT
AAGATTTATGACATTGCTCGGTTAGAAGATGAAATTGATCACCTTTCAGC
TGCTGCAGAGGAAGAACTCCGAAAAAAGAAAACTGTCAGATACTTGGATG
TTTTTAAATCCAAAGAAATCAGACTTGCATTTCTGGCTGGGGCTGGACTT
CAGGCATTTCAACAGTTCACTGGTATCAACACAGTCATGTACTACAGCCC
GACAATTGTCCAAATGGCTGGCTTCCAGTCCAACCAGCTAGCGCTTCTCC
TATCTCTTGCTGTTGCTGGTACAAATGCAGTTGGCACAATTGTTGGAATT
TATCTTATTGACCATTTTGGAAGGAAAAAGTTGGCCCTCTCTAGCTTAGC
TGGTGTTATTATATCCCTCGTCTTACTCTCTTGGGCATTCATCAGTGGAT
CATCTGCTTCTTCAAGTGGAGTCTATGGTTGGATTGCAGTCATCGGGTTA
GCCCTATATATTGCTTTCTTTGCACCTGGAATGGGACCTGTGCCATGGAC
TCTGAACTCTGAGGTGTATCCTGAGCAATACCGTGGAATTTGTGGAGGTA
TGTCATCTACTGTGAAC
back to top