FC876463

Overview
NameFC876463
Unique NameFC876463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10428 contig Ccv1_Contig10428:2..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR1_RABIT (Solute carrier family 2, facilitated glucose transporter member 1 OS=Oryctolagus cuniculus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 59/219 (26.94%), Postives = 106/219 (48.40%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFM-KSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE 675
            W  +L V  VPA++  +++   PESPR+L + ++++ +A  VL K+   A +  ++  +   + + +R+KK V  L++F+S   R                 IN V YYS +I + AG Q               N   T+V +++++  GR+ L L  LAG+    VL++ A               +A+ G   ++AFF  G GP+PW + +E++ +
Sbjct:  186 WPLLLSVIFVPALLQCIVLPLCPESPRFLLINRNEENRAKSVLKKLRGNADVTRDLQEMKEESRQMMREKK-VTILELFRSPAYRQPILSAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGI---VNTAFTVVSLFVVERAGRRTLHLIGLAGMAACAVLMTIALALLEQLPWMSYLSIVAIFG---FVAFFEVGPGPIPWFIVAELFSQ 397          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR3_MOUSE (Solute carrier family 2, facilitated glucose transporter member 3 OS=Mus musculus GN=Slc2a3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 56/221 (25.34%), Postives = 108/221 (48.87%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFM-KSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELR--KKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE 675
            W  +LG++ +PAI+    + F PESPR+L + K ++++A  +L +++  + +  EI  +    +E +R  ++K V  L++F+S                     IN V YYS  I + AG Q               N + T+V ++L++  GR+ L +  L G+ +  V ++   I            ++ ++ + +Y+AFF  G GP+PW + +E++ +
Sbjct:  184 WPGLLGLTIIPAILQSAALPFCPESPRFLLINKKEEDQATEILQRLWGTSDVVQEIQEMK---DESVRMSQEKQVTVLELFRSPNYVQPLLISIVLQLSQQLSGINAVFYYSTGIFKDAGVQE---PIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSVFMT---ISLLLKDDYEAMSFVCIVAILIYVAFFEIGPGPIPWFIVAELFSQ 395          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR1_CHICK (Solute carrier family 2, facilitated glucose transporter member 1 OS=Gallus gallus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 57/224 (25.45%), Postives = 107/224 (47.77%), Query Frame = 1
Query:    7 GVPGTWRWMLGVSAVPAIIHFVLMLFMPESPRWLFM-KSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE 675
            G    W  +LG   VPA++  +++ F PESPR+L + ++++ KA  VL K+     +  ++  +   + + +R+KK V  +++F+S   R                 IN V YYS +I + +G +               N   T+V +++++  GR+ L L  LAG+    +L++ A               +A+ G   ++AFF  G GP+PW + +E++ +
Sbjct:  180 GNDSLWPLLLGFIFVPALLQCIILPFAPESPRFLLINRNEENKAKSVLKKLRGTTDVSSDLQEMKEESRQMMREKK-VTIMELFRSPMYRQPILIAIVLQLSQQLSGINAVFYYSTSIFEKSGVEQ---PVYATIGSGVVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALTLLDQMPWMSYLSIVAIFG---FVAFFEIGPGPIPWFIVAELFSQ 396          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR2_RAT (Solute carrier family 2, facilitated glucose transporter member 2 OS=Rattus norvegicus GN=Slc2a2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 56/219 (25.57%), Postives = 103/219 (47.03%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE 675
            W  +LG+SAVPA++  +L+LF PESPR+L++  ++E +A   L ++     +  +I+ +    EE   ++K V  + +F     R                 IN + YYS +I Q AG                 N + T V + L++  GR+ L L+ + G+    V +S   +            ++++  + L+++FF  G GP+PW + +E + +
Sbjct:  216 WHILLGLSAVPALLQCLLLLFCPESPRYLYLNLEEEVRAKKSLKRLRGTEDITKDINEMRKEKEEASTEQK-VSVIQLFTDPNYRQPIVVALMLHLAQQFSGINGIFYYSTSIFQTAGISQ---PVYATIGVGAINMIFTAVSVLLVEKAGRRTLFLAGMIGMFFCAVFMSLGLVLLDKFTW---MSYVSMTAIFLFVSFFEIGPGPIPWFMVAEFFSQ 427          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: ARAE_ECOLI (Arabinose-proton symporter OS=Escherichia coli (strain K12) GN=araE PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 64/236 (27.12%), Postives = 108/236 (45.76%), Query Frame = 1
Query:   16 GTWRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA-RLEDEIDHLSAAAEEELRKKKTVRYLDVFK-SKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSSTVN 717
            G WR MLGV A+PA++  +L++F+P SPRWL  K    +A  VL  + D + +  +E++ +     E L+ K+    L  FK ++ +R                 +N +MYY+P I +MAGF + +           T    T + ++ +D  GRK       + + +  ++L +  +            W++V    + IA +A    PV W L SE+ P + R      S+T N
Sbjct:  175 GNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEI----RESLKLKQGGWAL--FKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTN 404          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: ARAE_ECO57 (Arabinose-proton symporter OS=Escherichia coli O157:H7 GN=araE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 64/236 (27.12%), Postives = 108/236 (45.76%), Query Frame = 1
Query:   16 GTWRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA-RLEDEIDHLSAAAEEELRKKKTVRYLDVFK-SKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSSTVN 717
            G WR MLGV A+PA++  +L++F+P SPRWL  K    +A  VL  + D + +  +E++ +     E L+ K+    L  FK ++ +R                 +N +MYY+P I +MAGF + +           T    T + ++ +D  GRK       + + +  ++L +  +            W++V    + IA +A    PV W L SE+ P + R      S+T N
Sbjct:  175 GNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEI----RESLKLKQGGWAL--FKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTN 404          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: ERDL8_ARATH (Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 67/248 (27.02%), Postives = 104/248 (41.94%), Query Frame = 1
Query:    7 GVPGTWRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIY----DIARLEDEID-------HLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSSTVN 717
            G    WR +      P ++ F    F+PESPRWL M        + L K+     +I R   EI        HL  A   +L  KK +R++ V                        IN V++Y+  I   AG                  A+G  +   LID  GR+ L ++S  G++I  +L+  +F+         +   +AV G+ +YI  F+ GMG +PW + SE++P   +G  GG+ + VN
Sbjct:  181 GAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIV------------GVGLMFFQQFVGINGVIFYAQQIFVSAGASPTLGSILYSIEQVVLTALGATL---LIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKAHGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSEIFPINLKGTAGGLVTVVN 413          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR3_RABIT (Solute carrier family 2, facilitated glucose transporter member 3 (Fragment) OS=Oryctolagus cuniculus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 57/223 (25.56%), Postives = 105/223 (47.09%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEE--ELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR 684
            W  +LG + +PAI+    + F PESPR+L +  ++++A  +L  +  +   +D    +    EE   +R++K V  L++F++   R                 IN V YYS  I + AG +               N + TIV ++L++  GR+ L L  L G+ +  VL++ + +  X      +   + +  + +Y AFF  G GP+PW + + ++ +  R
Sbjct:   87 WPVLLGFTIIPAILQSAALPFCPESPRFLLINKEEDEAKQILQILQRLWGTQDVAQDIQEMKEESARMRQEKQVTVLELFRAPSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDAGVRE---PIYATIGAGVVNTIFTIVSVFLVERAGRRTLHLIGLGGMALCSVLMTVSLLLKXKYDTMSL---VCIAAILIYAAFFEIGPGPIPWLIVTGLFSQDPR 303          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: GTR3_CANFA (Solute carrier family 2, facilitated glucose transporter member 3 OS=Canis familiaris GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 53/227 (23.35%), Postives = 109/227 (48.02%), Query Frame = 1
Query:    7 GVPGTWRWMLGVSAVPAIIHFVLMLFMPESPRWLFM-KSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVI---GLALYIAFFAPGMGPVPWTLNSEVYPE 675
            G    W  +LG + +PA++    + F PESPR+L + + ++E A  +L +++    +  +I  +   +   + ++K V  L++F+S+  R                 IN V YYS  I + AG +               N + T+V ++L++  GR+ L +  L G+ +  +L++ + +          Y W++ +    + +++AFF  G GP+PW + +E++ +
Sbjct:  179 GTEELWPLLLGFTIIPAVLQSAALPFCPESPRFLLINRKEEENAKEILQRLWGTQDVSQDIQEMKDES-ARMAQEKQVTVLELFRSRSYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGVEE---PIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSILMTISLLLKDN------YNWMSFVCIGAILVFVAFFEIGPGPIPWFIVAELFSQ 395          
BLAST of FC876463 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 66/235 (28.09%), Postives = 98/235 (41.70%), Query Frame = 1
Query:   19 TWRWMLGVSAVPAIIHFVLMLFMPESPRWLFMKS--DKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSSTVN 717
            +WR ML V  +P++     +  +PESPRWL MK   D  + +L+ +   D    E   +   AAA  E  + + V    +  S  +R                 I+  +YYSP I++ AG Q              T  V  +   +LID  GRK L   S  G+ + L  LS+                + V G    +AFF+ GMGPV W L SE++P + R     + +  N
Sbjct:  212 SWRIMLAVGILPSVFIGFALCVIPESPRWLVMKGRVDSAREVLMKTNERDDEAEERLAEIQLAAAHTEGSEDRPVWRELLSPSPVVRKMLIVGFGIQCFQQITGIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVFILFATFLIDSVGRKPLLYVSTIGMTLCLFCLSFTLTFLGQGTLGITLALLFVCG---NVAFFSIGMGPVCWVLTSEIFPLRLRAQASALGAVGN 443          
The following BLAST results are available for this feature:
BLAST of FC876463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
GTR1_RABIT4.338e-1826.94Solute carrier family 2, facilitated glucose trans... [more]
GTR3_MOUSE5.666e-1825.34Solute carrier family 2, facilitated glucose trans... [more]
GTR1_CHICK5.666e-1825.45Solute carrier family 2, facilitated glucose trans... [more]
GTR2_RAT9.665e-1825.57Solute carrier family 2, facilitated glucose trans... [more]
ARAE_ECOLI9.665e-1827.12Arabinose-proton symporter OS=Escherichia coli (st... [more]
ARAE_ECO579.665e-1827.12Arabinose-proton symporter OS=Escherichia coli O15... [more]
ERDL8_ARATH1.262e-1727.02Sugar transporter ERD6-like 8 OS=Arabidopsis thali... [more]
GTR3_RABIT1.649e-1725.56Solute carrier family 2, facilitated glucose trans... [more]
GTR3_CANFA1.649e-1723.35Solute carrier family 2, facilitated glucose trans... [more]
PLT4_ARATH3.673e-1728.09Probable polyol transporter 4 OS=Arabidopsis thali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CA12RM1 EHR Citrus clementina cDNA clone KN0AAN2CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876463 ID=FC876463; Name=FC876463; organism=Citrus clementina; type=EST; length=717bp
GCACGAGGGGTCCCTGGAACATGGAGATGGATGCTTGGAGTATCAGCTGT
GCCAGCTATCATTCACTTTGTCTTAATGCTTTTTATGCCGGAGTCTCCTA
GATGGCTTTTCATGAAGAGTGACAAAGAAAAAGCCATTTTGGTTCTTTCT
AAGATTTATGACATTGCTCGGTTAGAAGATGAAATTGATCACCTTTCAGC
TGCTGCAGAGGAAGAACTCCGAAAAAAGAAAACTGTCAGATACTTGGATG
TTTTTAAATCCAAAGAAATCAGACTTGCATTTCTGGCTGGGGCTGGACTT
CAGGCATTTCAACAGTTCACTGGTATCAACACAGTCATGTACTACAGCCC
GACAATTGTCCAAATGGCTGGCTTCCAGTCCAACCAGCTAGCGCTTCTCC
TATCTCTTGCTGTTGCTGGTACAAATGCAGTTGGCACAATTGTTGGAATT
TATCTTATTGACCATTTTGGAAGGAAAAAGTTGGCCCTCTCTAGCTTAGC
TGGTGTTATTATATCCCTCGTCTTACTCTCTTGGGCATTCATCAGTGGAT
CATCTGCTTCTTCAAGTGGAGTCTATGGTTGGATTGCAGTCATCGGGTTA
GCCCTATATATTGCTTTCTTTGCACCTGGAATGGGACCTGTGCCATGGAC
TCTGAACTCTGAGGTGTATCCTGAGCAATACCGTGGAATTTGTGGAGGTA
TGTCATCTACTGTGAAC
back to top