FC877780

Overview
NameFC877780
Unique NameFC877780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877780_ssr65 microsatellite FC877780_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4349 contig Ccv1_Contig4349:26..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRSY (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus suis (strain 05ZYH33) GN=dapL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.759e-16
Identity = 57/174 (32.76%), Postives = 86/174 (49.43%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA---KTGIRAWVGTGGPP--FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L + RR +HQ PEL  +EF+T   L   ++ +     +      KTGI  ++ TG  P   +  RAD+D LPI E    ++KS    +MHACGHD H+ + +G  +  K  E   +  ++ +FQPAEE   G   M   GA  D   +  + +HV  +   G + +    L AG
Sbjct:    4 LIATRRALHQIPELGMEEFKTHAFLMETIEGLLQDCSFAQVRTWKTGILVYL-TGSAPEKTIGWRADIDGLPIVEETGLDFKSLHPDRMHACGHDFHMTIALGLLE--KMAEQQPRNNLLFLFQPAEENLAGGMLMYEAGAFGDWLPDEFYGLHVRPDLKVGQMATNRATLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRS2 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus suis (strain 98HAH33) GN=dapL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.759e-16
Identity = 57/174 (32.76%), Postives = 86/174 (49.43%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA---KTGIRAWVGTGGPP--FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L + RR +HQ PEL  +EF+T   L   ++ +     +      KTGI  ++ TG  P   +  RAD+D LPI E    ++KS    +MHACGHD H+ + +G  +  K  E   +  ++ +FQPAEE   G   M   GA  D   +  + +HV  +   G + +    L AG
Sbjct:    4 LIATRRALHQIPELGMEEFKTHAFLMETIEGLLQDCSFAQVRTWKTGILVYL-TGSAPEKTIGWRADIDGLPIVEETGLDFKSLHPDRMHACGHDFHMTIALGLLE--KMAEQQPRNNLLFLFQPAEENLAGGMLMYEAGAFGDWLPDEFYGLHVRPDLKVGQMATNRATLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRPN (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae GN=dapL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.759e-16
Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHAC HD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M  DGA  D   +  + +HV  +   G I +    L AG
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACVHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEDGAFGDWLPDQFYGLHVRPDLKVGQIATNTHTLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRMU (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus mutans GN=dapL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.759e-16
Identity = 54/177 (30.51%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            T+D ++ +RR +HQ PE+  +EF+T   L   +  +  G  +   +T   GI  ++ G+     +  R D+DALP+ E     + S+  G+MHACGHD H+ + +G    +   +   K  ++ +FQPAEE   G   M  DGA  +   +  + +HV  +   G I +    L AG
Sbjct:    2 TLDLIK-IRRDLHQIPEIGLEEFKTQAYLLERIAEITNGKDFVEQRTWRTGILVFLKGSRPQKTIGWRTDIDALPVVEETGLAFASQHEGRMHACGHDMHMTIALGLLDTMVQVQP--KNNLLFLFQPAEENEAGGMLMYEDGAFGNWQPDEFYGLHVRPDFKVGDIATNTSTLFAG 175          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACLS (Putative N-acetyldiaminopimelate deacetylase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=dapL PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.506e-15
Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L  +RR +HQ PE+  +E +T + L   + ++     +   +T   GI  ++ G+ G   +  R D+D LP++E     + SK  G+MHACGHD H+ + +G  +  K  E   K  ++ +FQPAEE   G K M   GA ++   +  + +HV  +   G I +    L AG
Sbjct:    4 LIEIRRQLHQIPEIGLEEHKTQKYLLTIIHQIIQNKSFIQVETWQTGILVYLKGSQGQKTIGWRTDIDGLPVEELTNLPFASK-NGRMHACGHDIHMTVALGLLE--KLSESQPKNNLLFLFQPAEENEAGGKLMYDGGAFKNWLPDEFYGLHVRPDLKVGDIATNEQTLFAG 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACLM (Putative N-acetyldiaminopimelate deacetylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=dapL PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.569e-15
Identity = 53/173 (30.64%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L  +RR +HQ PE+  +E +T + L   + ++     +   +T   G+  ++ G+ G   +  R D+D LP++E     + SK  G+MHACGHD H+ + +G  +  K  E   K  ++ +FQPAEE   G K M   GA ++   +  + +HV  +   G I +    L AG
Sbjct:    4 LIEIRRQLHQIPEIGLEEHKTQKYLLTIIHQIIQNKSFIQVETWQTGLLVYLKGSQGQKTIGWRTDIDGLPVEELTNLPFASK-NGRMHACGHDIHMTVALGLLE--KLSESQPKNNLLFLFQPAEENEAGGKLMYDGGAFKNWLPDEFYGLHVRPDLKVGDIATNEQTLFAG 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: ABGA_HAEIN (Aminobenzoyl-glutamate utilization protein A homolog OS=Haemophilus influenzae GN=abgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  395 LDRMEIGYKYPLAKTGIRAWVGTGGP-PFVALRADMDALPIQEAVEWE-------YKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            L++ME GY      TG  A   +G P   +ALR D+D + + E    E       + S   G MHACGHD+H+ + +G A  +   +  L G V ++FQPAEE   GA  +   G ++D +   + H+S    TG + + P   L+
Sbjct:   81 LEKME-GY------TGCVALFDSGKPGKTIALRFDIDCVNVTETRSPEHIPNKEGFASINDGFMHACGHDSHITIGLGVALWIAQNKDKLTGKVKIVFQPAEEGVRGAAAIAQSGIIDDADYFASSHISFCANTGTVIANPRNFLS 219          
The following BLAST results are available for this feature:
BLAST of FC877780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_STRSY6.759e-1632.76Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRS26.759e-1632.76Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRPN6.759e-1631.21Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRMU6.759e-1630.51Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_LACLS1.506e-1531.21Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACLM2.569e-1530.64Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
ABGA_HAEIN2.939e-1132.88Aminobenzoyl-glutamate utilization protein A homol... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877780 ID=FC877780; Name=FC877780; organism=Citrus clementina; type=EST; length=828bp
TTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCT
TGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACG
CCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATC
AACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGGCGGCAGCGTCA
AGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCTGCGGAGTGTGG
AGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGAC
GGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGC
TTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGAT
CGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGC
ATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGG
ATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTG
GCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCAT
CGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTG
TAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGG
ATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCA
CGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTT
TGCTAGCCGGCTGTGGCTTTTTCCATGC
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