FC877780

Overview
NameFC877780
Unique NameFC877780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877780_ssr65 microsatellite FC877780_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4349 contig Ccv1_Contig4349:26..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: YTNL_BACSU (Uncharacterized hydrolase ytnL OS=Bacillus subtilis GN=ytnL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.601e-33
Identity = 76/172 (44.19%), Postives = 106/172 (61.63%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFF 823
            L  +RR +HQ PEL+ +EFET+  ++  L    I  +    KTG+ A + G    P +ALRAD+DALPI+E     Y SK  G MHACGHD H A L+GAA +LK  +  LKG + L+FQPAEEAG GA +++ DG L+ ++A+  +H   +   G +G + GPL+A    F
Sbjct:   41 LIGIRRHLHQYPELSKEEFETTAFIKKCLKEKGIQIRPTALKTGVFADIAGESEGPAIALRADIDALPIEEKTGLPYASKHKGIMHACGHDFHTAALLGAAFLLKENQDSLKGKIRLLFQPAEEAGAGATKVIEDGQLDGIDAVIGLHNKPDIAVGTVGLKTGPLMAAVDRF 212          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: YHAA_BACSU (Putative amidohydrolase yhaA OS=Bacillus subtilis GN=yhaA PE=3 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 3.692e-30
Identity = 73/170 (42.94%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGP-PFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEE-AGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFF 823
            +RR  H  PEL+FQE +T+  + +  + + +  +  +   G+ A +    P P VALRAD DALPIQ+  +  Y SKV G MHACGHD H A L+  AK+L    H LKGT ++I Q AEE    GAK M+ DG LE+ + IF  H+    P G I  RPG ++A    F
Sbjct:   24 IRRHFHMYPELSFQEEKTAAFIASYYESLGVPIRTNVGGRGVLANIEGSEPGPTVALRADFDALPIQDEKDVPYASKVPGVMHACGHDGHTAALLAVAKVLHQNRHELKGTFVMIHQHAEEYYPGGAKPMIDDGCLENTDVIFGTHLWATEPLGTILCRPGAVMAAADRF 193          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y100_SYNY3 (Uncharacterized hydrolase sll0100 OS=Synechocystis sp. (strain PCC 6803) GN=sll0100 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.313e-27
Identity = 71/181 (39.23%), Postives = 99/181 (54.70%), Query Frame = 2
Query:  275 MELARRPETV-DWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGG--PPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            MEL    +T+   L  +RR +H +PEL+ QE++T+  +   L    +  +  + KTG+   +   G  P  +A+R DMDALPI+E V   + S+  G MHACGHD H  + +G A +L    H L G V  +FQPAEE   GA  M+ DGA++ V  I  VHV    P   +G R G L A
Sbjct:    1 MELKNLAQTLLPRLVEIRRHLHAHPELSGQEYQTAAYVAGVLSSCGLHVEEAIGKTGVVGQLSGKGDDPRLLAIRTDMDALPIEEMVSLPFASRHPGVMHACGHDIHTTLGLGTAMVLSQMGHRLPGDVRFLFQPAEEIAQGASWMIQDGAMKGVSHILGVHVFPSIPAQQVGIRYGALTA 181          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1433_STAAC (Uncharacterized hydrolase SACOL1433 OS=Staphylococcus aureus (strain COL) GN=SACOL1433 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.738e-25
Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHL--LKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVS 757
            ++++   RR +HQ+PEL+  EFET+  ++A LD + I Y  PL +TG+ A++   G   +A RAD+DALPI E  +  Y+S+    MHACGHD H   L+   +  K  +    L   V+ IFQPAEE G GA R++  GA +   +EA+F +HV+
Sbjct:    4 LEFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVN 158          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1410_STAAR (Uncharacterized hydrolase SAR1410 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1410 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.738e-25
Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHL--LKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVS 757
            ++++   RR +HQ+PEL+  EFET+  ++A LD + I Y  PL +TG+ A++   G   +A RAD+DALPI E  +  Y+S+    MHACGHD H   L+   +  K  +    L   V+ IFQPAEE G GA R++  GA +   +EA+F +HV+
Sbjct:    4 LEFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTTLMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVN 158          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1399_STAA8 (Uncharacterized hydrolase SAOUHSC_01399 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_01399 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.738e-25
Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHL--LKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVS 757
            ++++   RR +HQ+PEL+  EFET+  ++A LD + I Y  PL +TG+ A++   G   +A RAD+DALPI E  +  Y+S+    MHACGHD H   L+   +  K  +    L   V+ IFQPAEE G GA R++  GA +   +EA+F +HV+
Sbjct:    4 LEFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVN 158          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1398_STAAM (Uncharacterized hydrolase SAV1398 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV1398 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.738e-25
Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHL--LKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVS 757
            ++++   RR +HQ+PEL+  EFET+  ++A LD + I Y  PL +TG+ A++   G   +A RAD+DALPI E  +  Y+S+    MHACGHD H   L+   +  K  +    L   V+ IFQPAEE G GA R++  GA +   +EA+F +HV+
Sbjct:    4 LEFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVN 158          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1339_STAAS (Uncharacterized hydrolase SAS1339 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1339 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.738e-25
Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHL--LKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVS 757
            ++++   RR +HQ+PEL+  EFET+  ++A LD + I Y  PL +TG+ A++   G   +A RAD+DALPI E  +  Y+S+    MHACGHD H   L+   +  K  +    L   V+ IFQPAEE G GA R++  GA +   +EA+F +HV+
Sbjct:    4 LEFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVN 158          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1291_STAA3 (Uncharacterized hydrolase SAUSA300_1291 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_1291 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.738e-25
Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHL--LKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVS 757
            ++++   RR +HQ+PEL+  EFET+  ++A LD + I Y  PL +TG+ A++   G   +A RAD+DALPI E  +  Y+S+    MHACGHD H   L+   +  K  +    L   V+ IFQPAEE G GA R++  GA +   +EA+F +HV+
Sbjct:    4 LEFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVN 158          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1286_STAAW (Uncharacterized hydrolase MW1286 OS=Staphylococcus aureus (strain MW2) GN=MW1286 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.738e-25
Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHL--LKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVS 757
            ++++   RR +HQ+PEL+  EFET+  ++A LD + I Y  PL +TG+ A++   G   +A RAD+DALPI E  +  Y+S+    MHACGHD H   L+   +  K  +    L   V+ IFQPAEE G GA R++  GA +   +EA+F +HV+
Sbjct:    4 LEFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVN 158          
The following BLAST results are available for this feature:
BLAST of FC877780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
YTNL_BACSU1.601e-3344.19Uncharacterized hydrolase ytnL OS=Bacillus subtili... [more]
YHAA_BACSU3.692e-3042.94Putative amidohydrolase yhaA OS=Bacillus subtilis ... [more]
Y100_SYNY31.313e-2739.23Uncharacterized hydrolase sll0100 OS=Synechocystis... [more]
Y1433_STAAC2.738e-2541.03Uncharacterized hydrolase SACOL1433 OS=Staphylococ... [more]
Y1410_STAAR2.738e-2541.03Uncharacterized hydrolase SAR1410 OS=Staphylococcu... [more]
Y1399_STAA82.738e-2541.03Uncharacterized hydrolase SAOUHSC_01399 OS=Staphyl... [more]
Y1398_STAAM2.738e-2541.03Uncharacterized hydrolase SAV1398 OS=Staphylococcu... [more]
Y1339_STAAS2.738e-2541.03Uncharacterized hydrolase SAS1339 OS=Staphylococcu... [more]
Y1291_STAA32.738e-2541.03Uncharacterized hydrolase SAUSA300_1291 OS=Staphyl... [more]
Y1286_STAAW2.738e-2541.03Uncharacterized hydrolase MW1286 OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877780 ID=FC877780; Name=FC877780; organism=Citrus clementina; type=EST; length=828bp
TTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCT
TGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACG
CCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATC
AACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGGCGGCAGCGTCA
AGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCTGCGGAGTGTGG
AGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGAC
GGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGC
TTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGAT
CGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGC
ATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGG
ATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTG
GCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCAT
CGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTG
TAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGG
ATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCA
CGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTT
TGCTAGCCGGCTGTGGCTTTTTCCATGC
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