FC877780

Overview
NameFC877780
Unique NameFC877780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877780_ssr65 microsatellite FC877780_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4349 contig Ccv1_Contig4349:26..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1230_STAAN (Uncharacterized hydrolase SA1230 OS=Staphylococcus aureus (strain N315) GN=SA1230 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.738e-25
Identity = 64/156 (41.03%), Postives = 95/156 (60.90%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHL--LKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVS 757
            ++++   RR +HQ+PEL+  EFET+  ++A LD + I Y  PL +TG+ A++   G   +A RAD+DALPI E  +  Y+S+    MHACGHD H   L+   +  K  +    L   V+ IFQPAEE G GA R++  GA +   +EA+F +HV+
Sbjct:    4 LEFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVN 158          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1513_STAHJ (Uncharacterized hydrolase SH1513 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1513 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.670e-25
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGT----VILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVS 757
            ++++   RR +HQ+PEL+  EFET++ +   L+ + + Y+ PL +TG  A++       +A RAD+DALPI E  + +Y+S+    MHACGHD H   L+   K  + +E   KGT    V+ IFQPAEE G GA R++  GA  +  +EA+F +HV+
Sbjct:    4 LEFVTKHRRHLHQHPELSLHEFETTKYITQFLEELGVSYERPL-ETGAIAYLNGNSDHTIAFRADIDALPIFEENDVDYRSQTDNVMHACGHDGHTTALMLFVK--RCKEMFDKGTLPHNVVFIFQPAEETGGGANRLIKAGAFNNYPIEAVFGIHVN 158          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_GEOKA (Putative N-acetyldiaminopimelate deacetylase OS=Geobacillus kaustophilus GN=dapL PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.359e-24
Identity = 67/168 (39.88%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  317 SVRRTIHQNPELAFQEFETSR-LLRAELDRMEIGYKYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ++RR +HQ PEL FQEF+T + LLR      +   +    KTGI   V GT     +  RADMD LPI+E     Y+SK  G+MHACGHD H+++ +G   +     H LK  ++ +FQPAEE   GAK M+    + +   + I A+H++ E+P G I ++ G L A
Sbjct:    9 AIRRDLHQIPELGFQEFKTQQYLLRYIQSLPQERLQVRTWKTGIFVKVNGTSPRKTIGYRADMDGLPIREETGLPYRSKHEGRMHACGHDVHMSIALGV--LTHFAHHPLKDDLLFVFQPAEEGPGGAKPMLESDIMREWKPDIIVALHIAPEYPVGTIATKEGLLFA 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1253_STAAB (Uncharacterized hydrolase SAB1253 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1253 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.318e-24
Identity = 63/156 (40.38%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREH--LLKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVS 757
            ++++   RR +HQ+PEL+  EFET+  ++A LD + I Y  PL +TG+ A++       +A RAD+DALPI E  +  Y+S+    MHACGHD H   L+   +  K  +    L   V+ IFQPAEE G GA R++  GA +   +EA+F +HV+
Sbjct:    4 LEFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNDSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDSGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVN 158          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1078_STAES (Uncharacterized hydrolase SE_1078 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1078 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.808e-24
Identity = 67/166 (40.36%), Postives = 94/166 (56.63%), Query Frame = 2
Query:  323 RRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKS--REHLLKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            RR +HQ PEL+  EFET+  + + L+ + + Y  PL KTG+ A++       +A RAD+DALPI E  + ++KSK    MHACGHD H   L+   K  K+   +  L   V+ IFQPAEE G GA R++  GA +   +EA+F  HV+     G I  R   + A
Sbjct:   11 RRHLHQYPELSLHEFETTSYITSFLEDLGVPYDRPL-KTGVIAYLEGNSHHTIAFRADIDALPIYEENDIDFKSKNDNVMHACGHDGHTTALMLFVKRCKALYDKSELPHNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGFHVNPFEKEGKIVIRDEEITA 175          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y1352_STAS1 (Uncharacterized hydrolase SSP1352 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1352 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.150e-23
Identity = 61/155 (39.35%), Postives = 93/155 (60.00%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILK--SREHLLKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHV 754
            ++++   RR +H++PEL+  E+ET++ +   LD + + Y+ PL  TG+ A++       +A RAD+DALPI E     Y+S+V   MHACGHD H   L+   K  K  + +  L   ++ IFQPAEE G GA R++  GA E   +EA+F +HV
Sbjct:    4 LEFVTEHRRYLHKHPELSLHEYETTKYIAHFLDDLGVPYERPL-DTGVIAYLSGNSTHTIAYRADIDALPIYEENNVSYRSEVDHVMHACGHDGHTTALMLFVKRCKNLADKGELPQNIVFIFQPAEETGGGANRLIRAGAFEKYPIEAVFGIHV 157          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y968_STAEQ (Uncharacterized hydrolase SERP0968 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0968 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.502e-23
Identity = 67/166 (40.36%), Postives = 94/166 (56.63%), Query Frame = 2
Query:  323 RRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKS--REHLLKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            RR +HQ PEL+  EFET+  + + L+ + + Y  PL KTG+ A++       +A RAD+DALPI E  + ++KSK    MHACGHD H   L+   K  K+   +  L   V+ IFQPAEE G GA R++  GA +   +EA+F  HV+     G I  R   + A
Sbjct:   11 RRHLHQYPELSLHEFETTSYITSFLEDLGVPYDRPL-KTGVIAYLEGNSHHTIAFRADIDALPIYEENDIDFKSKNDHVMHACGHDGHTTALMLFVKRCKALYDKSELPHNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGFHVNPFEKEGKIVIRDEEITA 175          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: CAAL4_RHOSR (Carboxylate-amine ligase RHA1_ro04240 OS=Rhodococcus sp. (strain RHA1) GN=RHA1_ro04240 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.502e-23
Identity = 69/170 (40.59%), Postives = 97/170 (57.06%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAW--VGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEE-AGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPL 802
            V+W    RR +H +PEL+F+E  T+ ++R  L  + +G +  L   G   W  VG      +ALRAD+DALP+ E     ++S+V G  HACGHDAH  ML+GAA +L   ++     V L+FQPAEE    GA   +A GAL+ V  IFA+H       G + +R GP+
Sbjct:  422 VEW----RRDLHAHPELSFEERRTTGVVRDHL--VGLGLEPVLMPGGTGLWCDVGPETGECIALRADLDALPVAETTGLPFESRVPGVSHACGHDAHTTMLMGAASVL--TKYPPPTRVRLVFQPAEETTPGGAVDTIAAGALDGVSKIFALHCDPHLEVGKLSTRTGPI 583          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: AMAA_BACST (N-acyl-L-amino acid amidohydrolase OS=Bacillus stearothermophilus GN=amaA PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.502e-23
Identity = 63/164 (38.41%), Postives = 91/164 (55.49%), Query Frame = 2
Query:  323 RRTIHQNPELAFQEFETSRLLRAELDRM-EIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEA-GNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            RR +H +PEL+FQE +T++ +   L     +    P   + +   +G      VA+RADMDALPIQE   +E+ SK  G MHACGHD H AML+G AKI       ++G +  +FQ AEE    GA+ M+  G ++ V+ +   H+      G IG   GP++A
Sbjct:   21 RRHLHAHPELSFQEEKTAQFVYETLQSFGHLELSRPTKTSVMARLIGQQPGRVVAIRADMDALPIQEENTFEFASKNPGVMHACGHDGHTAMLLGTAKIFSQLRDDIRGEIRFLFQHAEELFPGGAEEMVQAGVMDGVDVVIGTHLWSPLERGKIGIVYGPMMA 184          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: HIPO_CAMJE (Hippurate hydrolase OS=Campylobacter jejuni GN=hipO PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.371e-23
Identity = 69/161 (42.86%), Postives = 88/161 (54.66%), Query Frame = 2
Query:  293 PETVDW---LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKY--PLAKTGIRAWVGTGGPPF-VALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVH 751
            PE +D       +R  IH+NPEL F E  T++L+  +L   E GY+    + KTG+   +  G     + LRADMDALP+QE     YKSK    MHACGHD H   L+ AAK L S+     G + L FQPAEE   GAK M+ DG  E  D + +F  H
Sbjct:    5 PEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLK--EFGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACGHDGHTTSLLLAAKYLASQN--FNGALNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGWH 161          
The following BLAST results are available for this feature:
BLAST of FC877780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
Y1230_STAAN2.738e-2541.03Uncharacterized hydrolase SA1230 OS=Staphylococcus... [more]
Y1513_STAHJ4.670e-2539.87Uncharacterized hydrolase SH1513 OS=Staphylococcus... [more]
DAPL_GEOKA1.359e-2439.88Putative N-acetyldiaminopimelate deacetylase OS=Ge... [more]
Y1253_STAAB2.318e-2440.38Uncharacterized hydrolase SAB1253 OS=Staphylococcu... [more]
Y1078_STAES8.808e-2440.36Uncharacterized hydrolase SE_1078 OS=Staphylococcu... [more]
Y1352_STAS11.150e-2339.35Uncharacterized hydrolase SSP1352 OS=Staphylococcu... [more]
Y968_STAEQ1.502e-2340.36Uncharacterized hydrolase SERP0968 OS=Staphylococc... [more]
CAAL4_RHOSR1.502e-2340.59Carboxylate-amine ligase RHA1_ro04240 OS=Rhodococc... [more]
AMAA_BACST1.502e-2338.41N-acyl-L-amino acid amidohydrolase OS=Bacillus ste... [more]
HIPO_CAMJE4.371e-2342.86Hippurate hydrolase OS=Campylobacter jejuni GN=hip... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877780 ID=FC877780; Name=FC877780; organism=Citrus clementina; type=EST; length=828bp
TTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCT
TGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACG
CCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATC
AACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGGCGGCAGCGTCA
AGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCTGCGGAGTGTGG
AGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGAC
GGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGC
TTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGAT
CGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGC
ATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGG
ATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTG
GCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCAT
CGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTG
TAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGG
ATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCA
CGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTT
TGCTAGCCGGCTGTGGCTTTTTCCATGC
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