FC877780

Overview
NameFC877780
Unique NameFC877780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877780_ssr65 microsatellite FC877780_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4349 contig Ccv1_Contig4349:26..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACP2 (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus pumilus (strain SAFR-032) GN=dapL PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.979e-21
Identity = 65/170 (38.24%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            L S+RR +HQ PEL F+EF+T   L   LD       +    +TG+   V GT      A RADMD L I E   + ++S   GKMHACGHD H+ + +G   I       +K  ++ +FQPAEE   GA+ M+    L+    + I A+H++ E+P G I ++PG L A
Sbjct:    7 LISIRRDLHQIPELGFKEFKTQAYLINHLDAYSKDRIEMETWRTGLFVKVKGTNPERVFAYRADMDGLSIPEDTGYPFQSVHEGKMHACGHDLHMTIALGV--IDHFVHEPIKEDLLFMFQPAEEGPGGAEPMLTSDVLKKWTPDFITALHIAPEYPVGTIATKPGLLFA 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LISIV (Putative N-acetyldiaminopimelate deacetylase OS=Listeria ivanovii GN=dapL PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.115e-21
Identity = 60/168 (35.71%), Postives = 95/168 (56.55%), Query Frame = 2
Query:  317 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMM--ADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            S+RR +HQ PE  ++E++T   L   ++++   Y +    +TG+   V GT     +  R D+DALPI E     ++SK AG MHACGHD H+++ +G      S+    K  ++ +FQPAEE   GAK +M  A+ A    ++I+ +H++ E+  G I  +PG L A
Sbjct:    8 SIRRELHQIPETGYKEWKTQAYLLDYINKLPSRYLEVKKWRTGLLVRVSGTSPTKTIGYRTDIDALPITEETGLAFESKHAGNMHACGHDLHMSIALGVLTHFASKP--AKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGQIAIKPGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LISMO (Putative N-acetyldiaminopimelate deacetylase OS=Listeria monocytogenes GN=dapL PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.190e-20
Identity = 58/168 (34.52%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  317 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ++RR +HQ PE  ++E +T   L   + ++  G+ +    +TGI   V GT     +  R D+DALPI E  E  + SK  G MHACGHD H+++ +G      S+    K  ++ +FQPAEE   GAK +M      +   ++I+ +H++ E+  G I  +PG L A
Sbjct:    7 AIRRELHQIPETGYKELKTQAYLLDYISKLPSGHLEVKKWRTGILVLVKGTNPEKTIGYRTDIDALPITEETELPFASKHPGNMHACGHDLHMSIALGVLTHFASKP--AKDNLLFVFQPAEEGPGGAKPIMESTEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFA 172          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACLD (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dapL PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.190e-20
Identity = 64/179 (35.75%), Postives = 92/179 (51.40%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAW--------VGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVE--AIFAVHVSHEHPTGVIGSRPGPLLA 808
            +D L ++RR +HQ PEL FQE++T   L   L       K+P  +  I  W         GT     +A RADMD L I+E   + + S    +MHACGHD H+ + +G   I     H +K  ++ +FQPAEE   GA+ M+     +  E   I A+H++ E P G IG++ G L A
Sbjct:    3 LDELAAIRRDLHQIPELGFQEYKTQAYLLNHLA------KHPEGRIEIEKWRTGLFVKVKGTAPEKILAYRADMDGLSIREDTGYSFSSVHQDRMHACGHDFHMTIALGI--IDHFVRHPVKQDLLFLFQPAEEGPGGAEPMLESDLFKKWEPSMITALHIAPELPVGTIGTKSGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACSU (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus subtilis GN=dapL PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.555e-20
Identity = 63/179 (35.20%), Postives = 95/179 (53.07%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWV--------GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ++ L ++RR +H+ PEL FQEF+T + L   L++      YP  +  I  W         GT     +A RAD+DAL I+E     + S+  G MHACGHD H+ + +G   I     H +K  ++ +FQPAEE   GA+ M+    L+    + I A+H++ E P G I ++ G L A
Sbjct:    3 IEELIAIRRDLHRIPELGFQEFKTQQYLLNVLEQ------YPQDRIEIEKWRTGLFVKVNGTAPEKMLAYRADIDALSIEEQTGLPFASEHHGNMHACGHDLHMTIALGI--IDHFVHHPVKHDLLFLFQPAEEGPGGAEPMLESDVLKKWQPDFITALHIAPELPVGTIATKSGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACS1 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=dapL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.464e-20
Identity = 61/182 (33.52%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWV--------GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFH 826
            L  +RR +HQ PE+  +E+ETS  L      ++I    P     I+ W         G      +  R D+D LP++E     + SK  G+MHACGHD H+ + +G      S  H  K  +  IFQPAEE  +G  ++   G L++   + I+A+H + + P G IG R G L AG    H
Sbjct:    8 LIKIRRDLHQIPEIGLEEYETSDYL------LKIINGLPQENLEIKRWKTAILVHLNGENKNYTIGYRTDIDGLPVEEKTGLPFSSKHEGRMHACGHDIHMTVALGVLSYFAS--HRPKYNMTFIFQPAEENASGGMKLYQSGELDEWMPDEIYALHDNPQLPAGTIGCRKGTLFAGTCEIH 181          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_EXIS2 (Putative N-acetyldiaminopimelate deacetylase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=dapL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.464e-20
Identity = 61/179 (34.08%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRM-EIGYKYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDV--EAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFH 826
            +++   +RR +H+ PE  F+EF+T   +  ++    E    Y   +TG+   V G  G   +  RAD+D LPI+EA    + S+  G MHACGHD H ++ +G  +  +  E  +   V+ +FQPAEE   GA+ M+     E      ++ +HV+ E+P G I SRPG L A     H
Sbjct:    1 MEYAIEMRRELHKIPEPGFKEFKTQAFILDQIRSYPEDRVSYDTFETGVFVRVKGLTGNRTIGYRADIDGLPIEEATGLPFCSEHPGFMHACGHDVHASIALGLLR--RIVELPVMDDVVFLFQPAEEGPGGAEPMIKSPLFEKYRPSEMYGLHVAPEYPVGTIASRPGVLFASAREVH 177          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACHD (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus halodurans GN=dapL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.908e-20
Identity = 64/170 (37.65%), Postives = 91/170 (53.53%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWVG-TGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMM--ADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            L  VRR +H+ PEL F+E++T   L   +  +   + +    KTGI   VG   G   VA RADMD LPI E     + S+  G+MHACGHD H+ +  G  +      H  +  ++ IFQPAEE   GAK M+   +  +   + I A+H++ E+P G I +R G L A
Sbjct:    5 LIDVRRALHRIPELGFEEYKTQTYLLDLIQSLPQDFLEVKTWKTGILVRVGGRKGEKTVAYRADMDGLPITEETGLPFVSQHEGRMHACGHDLHMTIAFGLLR--HFAYHQPETHLLFIFQPAEEGPGGAKPMLDSEEFRMWWPDEIIALHIAPEYPVGTIATRKGLLFA 172          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LISIN (Putative N-acetyldiaminopimelate deacetylase OS=Listeria innocua GN=dapL PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.716e-20
Identity = 57/168 (33.93%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  317 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ++RR +HQ PE  ++E +T   L   + ++   + +    +TGI   V GT     +  R D+DALPI E     ++SK AG MHACGHD H+++ +G      S+    K  ++ +FQPAEE   GAK +M      +   + I+ +H++ E+  G I  +PG L A
Sbjct:    7 AIRRDLHQIPETGYKELKTQAYLLDYISKLPNEFLEIKKWRTGILVLVKGTNPGKTIGYRTDIDALPITEETGLPFESKHAGNMHACGHDLHMSIALGVLTHFASKP--AKDNLLFVFQPAEEGPGGAKPIMESAEFSEWRPDTIYGLHIAPEYKVGQIAIKPGLLFA 172          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_OENOB (Putative N-acetyldiaminopimelate deacetylase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=dapL PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 60/175 (34.29%), Postives = 88/175 (50.29%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAEL-----DRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED---VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L  +RR +H NPE+  QE +T + L  ++     + + I     +    +    G+     +ALR DMDALPIQE    ++ SK    MHACGHD H+ + +G        +H  K  +++ FQPAEE   G KR    G  +     +  +A+HV+ + P G I SR G L AG
Sbjct:    7 LIKIRRHLHANPEIGMQEVKTHQFLLEQIAKFPQENLTIETISEIPTALLVRIAGSDPKRTIALRTDMDALPIQEETGLDFASKNDHVMHACGHDIHMTVALGILSYF--AKHQPKDNLLVFFQPAEENEFGGKRFYDAGGFQGEYLPDEFYALHVNPQLPAGQIASRKGTLFAG 179          
The following BLAST results are available for this feature:
BLAST of FC877780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_BACP26.979e-2138.24Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_LISIV9.115e-2135.71Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LISMO1.190e-2034.52Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_BACLD1.190e-2035.75Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_BACSU1.555e-2035.20Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_LACS13.464e-2033.52Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_EXIS23.464e-2034.08Putative N-acetyldiaminopimelate deacetylase OS=Ex... [more]
DAPL_BACHD5.908e-2037.65Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_LISIN7.716e-2033.93Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_OENOB2.245e-1934.29Putative N-acetyldiaminopimelate deacetylase OS=Oe... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877780 ID=FC877780; Name=FC877780; organism=Citrus clementina; type=EST; length=828bp
TTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCT
TGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACG
CCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATC
AACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGGCGGCAGCGTCA
AGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCTGCGGAGTGTGG
AGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGAC
GGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGC
TTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGAT
CGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGC
ATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGG
ATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTG
GCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCAT
CGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTG
TAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGG
ATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCA
CGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTT
TGCTAGCCGGCTGTGGCTTTTTCCATGC
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