FC877780

Overview
NameFC877780
Unique NameFC877780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877780_ssr65 microsatellite FC877780_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4349 contig Ccv1_Contig4349:26..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACA2 (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus amyloliquefaciens (strain FZB42) GN=dapL PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 61/176 (34.66%), Postives = 93/176 (52.84%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWV--------GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE--DVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            L ++RR +H+ PE+ FQE++T + L   L++      YP  +  I  W         GT     +A RAD+DAL I+E     + S+  G MHACGHD H+ + +G   I     H +K  ++ +FQPAEE   GA+ M+    L+    + I A+H++ E P G I ++ G L A
Sbjct:    6 LIAIRRDLHRIPEIGFQEYKTQQYLLNLLNQ------YPEERIEIETWRTGIFVKVNGTAPEKMLAYRADIDALSIEEQTGLPFASEHPGFMHACGHDMHMTIALGI--IDHFVHHPVKHDLLFLFQPAEEGPGGAEPMLESDVLKKWTPDLITALHIAPELPVGTISTKSGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LISMF (Putative N-acetyldiaminopimelate deacetylase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dapL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.829e-19
Identity = 58/168 (34.52%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  317 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMM--ADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ++RR +HQ PE  ++E +T   L   + ++   + +    +TGI   V GT     +  R D+DALPI E     + SK  G MHACGHD H+++ +G      S+    K  ++ +FQPAEE   GAK +M  A+ A    ++I+ +H++ E+  G I  +PG L A
Sbjct:    7 AIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVKKWRTGILVLVKGTNPEKTIGYRTDIDALPITEETGLPFASKHPGNMHACGHDLHMSIALGVLTHFASKP--AKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFA 172          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LISMC (Putative N-acetyldiaminopimelate deacetylase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=dapL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.829e-19
Identity = 58/168 (34.52%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  317 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMM--ADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ++RR +HQ PE  ++E +T   L   + ++   + +    +TGI   V GT     +  R D+DALPI E     + SK  G MHACGHD H+++ +G      S+    K  ++ +FQPAEE   GAK +M  A+ A    ++I+ +H++ E+  G I  +PG L A
Sbjct:    7 AIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVKKWRTGILVLVKGTNPEKTIGYRTDIDALPITEETGLPFASKHPGNMHACGHDLHMSIALGVLTHFASKP--AKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFA 172          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACRJ (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus reuteri (strain JCM 1112) GN=dapL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.001e-19
Identity = 60/179 (33.52%), Postives = 85/179 (47.49%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY----KYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE---DVEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            T + L  +RR +HQ PELA QEF+T + L   +      +     +    T +   V    P   +  R D+DALP++E     Y S   G MHACGHD H+ + +G        EH  +  ++  FQPAEE+ NG KR    G        +  + +H + + P G IG R G L AG
Sbjct:    3 TEEELIQIRRHLHQIPELALQEFDTHQYLVETIAGFNQAFLEVRTFKELPTALMVLVHGKNPQRTIGYRTDIDALPVEEQTGLPYSSTHPGVMHACGHDIHMTVALGVLNYFS--EHQPQDNILFFFQPAEESENGGKRAYELGLFSGKWKPDEFYGLHDNPDLPAGAIGCRMGTLFAG 179          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACRD (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus reuteri (strain DSM 20016) GN=dapL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.001e-19
Identity = 60/179 (33.52%), Postives = 85/179 (47.49%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY----KYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE---DVEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            T + L  +RR +HQ PELA QEF+T + L   +      +     +    T +   V    P   +  R D+DALP++E     Y S   G MHACGHD H+ + +G        EH  +  ++  FQPAEE+ NG KR    G        +  + +H + + P G IG R G L AG
Sbjct:    3 TEEELIQIRRHLHQIPELALQEFDTHQYLVETIAGFNQAFLEVRTFKELPTALMVLVHGKNPQRTIGYRTDIDALPVEEQTGLPYSSTHPGVMHACGHDIHMTVALGVLNYFS--EHQPQDNILFFFQPAEESENGGKRAYELGLFSGKWKPDEFYGLHDNPDLPAGAIGCRMGTLFAG 179          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACF3 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dapL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.001e-19
Identity = 64/175 (36.57%), Postives = 84/175 (48.00%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLL-----RAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED---VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L  +R  +HQ PELA QE ET   L     + E D +EI     L    +    GT     +  R D+DALP+QE     Y S  +G MHACGHD H+ + +G      S  H  K  ++  FQPAEE+  G +R    G  E     +  + +H +    TGVIG R G L AG
Sbjct:    7 LIQIRHHLHQIPELALQETETHAYLMEVIGKMEQDHLEILEPEDLPTAILVRVNGTAPVRTIGYRTDIDALPVQEETGLPYASTHSGVMHACGHDVHMTVALGVLDYFAS--HQPKDNLLFFFQPAEESEAGGQRAYELGLFEGKWRPDEFYGLHDNPALKTGVIGCRLGTLFAG 179          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LISW6 (Putative N-acetyldiaminopimelate deacetylase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dapL PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.531e-19
Identity = 57/168 (33.93%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  317 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMM--ADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            ++RR +HQ PE  ++E +T   L A + ++   + +    +TGI   V GT     +  R D+DALPI E     ++S   G MHACGHD H+++ +G      S+    K  ++ +FQPAEE   GAK +M   + A    + I+ +H++ E+  G I  +PG L A
Sbjct:    7 AIRRDLHQIPETGYKELKTQAYLLAYISKLPNKHLEVKKWRTGILVLVKGTKPEKTIGYRTDIDALPITEETGLPFESNHVGNMHACGHDLHMSIALGVLTHFASKP--AKDNLLFVFQPAEEGPGGAKPIMESEEFAAWRPDTIYGLHIAPEYKVGEIAIKPGLLFA 172          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LEUMM (Putative N-acetyldiaminopimelate deacetylase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=dapL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.114e-18
Identity = 60/181 (33.15%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  293 PETVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDR-----MEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALE---DVEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            P   + L++ RR +H+ PELA  EF+T R L  ++       M I     L    +  + GT     V  RAD+DALP+ E     ++S   G MHACGHD H+++ +G  +     EH  K  +I+ FQPAEE+ +G K  +  G  E     +  + +H     P G + +  G L AG
Sbjct:    2 PVNEEDLKTYRRDLHKIPELALAEFKTHRYLLEKIQSWQTNFMTIRQVEELPTAMLVKFSGTDPSRTVGYRADIDALPVTEDTGLPFESTHKGVMHACGHDVHMSLALGLVQYFS--EHQPKDNLIVFFQPAEESKSGGKLAVDLGIFEGEWHPDEFYGIHDQPNLPAGTLSTLAGTLFAG 180          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACCN (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dapL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.114e-18
Identity = 58/174 (33.33%), Postives = 89/174 (51.15%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWVGTGGP-PFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            T+     +RR +HQ PEL FQE++T + +   ++ +   + +    KTG+   V    P   +  RADMD LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    2 TISKFVQIRRDLHQIPELGFQEWKTQQYILNYIETLPNEHIEVKTWKTGVIVKVKGKNPVKTIGYRADMDGLPIVEETGYEFASTHEGMMHACGHDFHTT--IGLGLLTATVNDRIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNMILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: IAAH_ENTAG (Indole-3-acetyl-aspartic acid hydrolase OS=Enterobacter agglomerans GN=iaaH PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.455e-18
Identity = 52/123 (42.28%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  437 TGIRAWVGTGGP-PFVALRADMDALPIQEAVEWEYK-------SKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVI 781
            TGI A + TG P P +A R DMDAL + E  +  ++       S   G MHACGHD H A+ +G A +LK     L G + LIFQPAEE   GA+ M+A G ++DV+   A+H+    P G +
Sbjct:   96 TGIVATLDTGRPGPTLAFRVDMDALDLNEDTDGHHRPFREDFASCNPGMMHACGHDGHTAIGLGLAHVLKQYADRLHGVIKLIFQPAEEGTRGARAMVAAGVVDDVDYFTAIHIGTGVPAGTV 218          
The following BLAST results are available for this feature:
BLAST of FC877780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_BACA22.245e-1934.66Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_LISMF3.829e-1934.52Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LISMC3.829e-1934.52Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LACRJ5.001e-1933.52Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACRD5.001e-1933.52Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACF35.001e-1936.57Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LISW68.531e-1933.93Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_LEUMM1.114e-1833.15Putative N-acetyldiaminopimelate deacetylase OS=Le... [more]
DAPL_BACCN1.114e-1833.33Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
IAAH_ENTAG1.455e-1842.28Indole-3-acetyl-aspartic acid hydrolase OS=Enterob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA74DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877780 ID=FC877780; Name=FC877780; organism=Citrus clementina; type=EST; length=828bp
TTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCT
TGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACG
CCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATC
AACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGGCGGCAGCGTCA
AGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCTGCGGAGTGTGG
AGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGAC
GGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGC
TTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGAT
CGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGC
ATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGG
ATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTG
GCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCAT
CGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTG
TAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGG
ATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCA
CGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTT
TGCTAGCCGGCTGTGGCTTTTTCCATGC
back to top