FC877780

Overview
NameFC877780
Unique NameFC877780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877780_ssr65 microsatellite FC877780_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4349 contig Ccv1_Contig4349:26..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACC4 (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus cereus (strain B4264) GN=dapL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.609e-17
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            TV     +RR +H+ PE+ F+E++T + +   +  +   + +    KTG+   V    P   +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   + K+    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+  G I ++ G L A
Sbjct:    2 TVSKFVQIRRDLHRIPEIGFKEWKTQQYILDYIGTLSHEFVEVKTWKTGVIVKVNGKNPEKIIGYRADIDGLPITEETGYEFASIHEGMMHACGHDVHTT--IGLGLLTKAVSERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYAVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: Y4TI_RHISN (Uncharacterized hydrolase y4tI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01500 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.744e-17
Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  305 DWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWV---GTGGPPFVALRADMDALPIQEAVE-WEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPG 796
            D +  +R  +H+ PEL+  E++T + +R  L+R  +        TG+   +    +G    VA+R D+DALPIQE  +   Y+S V G MHACGHD H ++ +G A       +   G + + FQPAEEA   G + ++ +  LE  +     HV+     G  G+R G
Sbjct:   20 DAVLELRHAMHREPELSNNEWKTQQRIRGMLERFGLKGATVFHNTGLYIDIEGSASGPKRAVAVRGDIDALPIQETRDDLPYQSHVEGVMHACGHDLHASIAMGVALAFHRMRNNFAGKLRVFFQPAEEAEPLGGRTVLEERLLEGFDNAVGFHVTPSIQVGKFGAREG 188          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACCQ (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus cereus (strain Q1) GN=dapL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.744e-17
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T R +   +  +   + +  + +TG+   V G      +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFKEWKTQRYILDYIGTLSNEHVEVKVWRTGVIVKVKGKNPEKVIGYRADIDGLPITEETGYEFASVHEGMMHACGHDLHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACC7 (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus cereus (strain AH187) GN=dapL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.744e-17
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T R +   +  +   + +  + +TG+   V G      +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFKEWKTQRYILDYIGTLSNEHVEVKVWRTGVIVKVKGKNPEKVIGYRADIDGLPITEETGYEFASVHEGMMHACGHDLHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_LACPL (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus plantarum GN=dapL PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.584e-17
Identity = 60/173 (34.68%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  332 IHQNPELAFQEFETSRLLRAELDRMEIGY----KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED---VEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFH 826
            +HQ PE+  QE ET   L + + +M   +      P   T I   V G      +  R D+DALP+ E     + S   G MHACGHD H+++ +G        E+     ++ +FQPAEE  +G +R+   GAL+     + IFA H +   PTG IG R G L AG    H
Sbjct:   15 LHQIPEIGLQEHETQAYLLSIIGKMPQEWLTIKTIPTLDTAILVKVSGLKHDYRIGYRTDIDALPVTENTGLPFASTHPGVMHACGHDIHMSVALGILSYF--AENRPATDMVFMFQPAEENASGGQRLYESGALDGDWMPDEIFAFHDNPNLPTGAIGCRMGTLFAGTCEIH 185          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRTD (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=dapL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 57/177 (32.20%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            T+D ++ +RR +HQ PE+  +EF+T   L   +  M  G  +   +T   GI  ++ G+     +  R D+D LPI E    ++KS   G+MHACGHD H+   +G    +   +   K  ++ +FQPAEE   G   M  DGA  D   +  + +HV  +   G I +    L AG
Sbjct:    2 TLDLIK-IRRDLHQIPEIGLEEFKTQAYLLERIAEMTEGKDFVEQRTWRTGILVFLHGSAPEKTIGWRTDIDGLPIVEETGLDFKSIHEGRMHACGHDIHMTTALGLLDQMLQVQP--KNNMLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDFKVGDIATNTNTLFAG 175          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRT2 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dapL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 57/177 (32.20%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            T+D ++ +RR +HQ PE+  +EF+T   L   +  M  G  +   +T   GI  ++ G+     +  R D+D LPI E    ++KS   G+MHACGHD H+   +G    +   +   K  ++ +FQPAEE   G   M  DGA  D   +  + +HV  +   G I +    L AG
Sbjct:    2 TLDLIK-IRRDLHQIPEIGLEEFKTQAYLLERIAEMTEGKDFVEQRTWRTGILVFLHGSAPEKTIGWRTDIDGLPIVEETGLDFKSIHEGRMHACGHDIHMTTALGLLDQMLQVQP--KNNMLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDFKVGDIATNTNTLFAG 175          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRT1 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dapL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 57/177 (32.20%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  299 TVDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            T+D ++ +RR +HQ PE+  +EF+T   L   +  M  G  +   +T   GI  ++ G+     +  R D+D LPI E    ++KS   G+MHACGHD H+   +G    +   +   K  ++ +FQPAEE   G   M  DGA  D   +  + +HV  +   G I +    L AG
Sbjct:    2 TLDLIK-IRRDLHQIPEIGLEEFKTQAYLLERIAEMTEGKDFVEQRTWRTGILVFLHGSAPEKTIGWRTDIDGLPIVEETGLDFKSIHEGRMHACGHDIHMTTALGLLDQMLQVQP--KNNMLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDFKVGDIATNTNTLFAG 175          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRSV (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus sanguinis (strain SK36) GN=dapL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 56/176 (31.82%), Postives = 90/176 (51.14%), Query Frame = 2
Query:  302 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            +D+L ++RR +HQ PE+  +E++T   L   +D +  G  +   +T   GI  ++ G+     +  R D+D LPI E    ++ S   G+MHACGHD H+ + +G  +   S +      ++ +FQPAEE   G   M  DGA  D   +  + +HV  +   G I +  G L AG
Sbjct:    2 LDYL-NIRRDLHQIPEIGLEEYKTHAYLMQVIDGLTAGLDFVEIRTWRTGILVFIKGSSPDKTIGWRTDIDGLPIVEDTGLDFASTHEGRMHACGHDMHMTVALGLLEQAVSTQP--THNLLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDLKVGDIATNRGTLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACC3 (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus cereus (strain 03BB102) GN=dapL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T + +   +  +   + +  + +TG+   V    P   +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFKEWKTQQYILDYIGTLSNEHVEVKVWETGVIVKVNGKNPEKIIGYRADIDGLPITEETGYEFASIHEGMMHACGHDVHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
The following BLAST results are available for this feature:
BLAST of FC877780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_BACC41.609e-1731.61Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
Y4TI_RHISN2.744e-1733.14Uncharacterized hydrolase y4tI OS=Rhizobium sp. (s... [more]
DAPL_BACCQ2.744e-1731.74Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_BACC72.744e-1731.74Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_LACPL3.584e-1734.68Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_STRTD6.114e-1732.20Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRT26.114e-1732.20Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRT16.114e-1732.20Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRSV6.114e-1731.82Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_BACC36.114e-1731.14Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877780 ID=FC877780; Name=FC877780; organism=Citrus clementina; type=EST; length=828bp
TTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCT
TGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACG
CCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATC
AACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGGCGGCAGCGTCA
AGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCTGCGGAGTGTGG
AGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGAC
GGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGC
TTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGAT
CGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGC
ATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGG
ATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTG
GCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCAT
CGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTG
TAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGG
ATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCA
CGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTT
TGCTAGCCGGCTGTGGCTTTTTCCATGC
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