FC877780

Overview
NameFC877780
Unique NameFC877780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877780_ssr65 microsatellite FC877780_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4349 contig Ccv1_Contig4349:26..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRPS (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae (strain CGSP14) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 55/173 (31.79%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHACGHD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M  DGA  D      + +HV  +   G I +    L AG
Sbjct:    4 LIQTRRALHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEDGAFGDWLPNQFYGLHVRPDLKVGQIATNTHTLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACCZ (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus cereus (strain ZK / E33L) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T + +   +  +   + +  + +TG+   V G      +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFKEWKTQQYILDYIGTLSNEHVEVKVWRTGVIVKVKGKNPEKVIGYRADIDGLPITEETGYEFASVHEGMMHACGHDLHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACC1 (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus cereus (strain ATCC 10987) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T + +   +  +   + +  + +TG+   V G      +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFKEWKTQQYILDYIGTLSNEHVEVKVWRTGVIVKVKGRNPEKVIGYRADIDGLPITEETGYEFASVHEGMMHACGHDLHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACC0 (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus cereus (strain AH820) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T + +   +  +   + +  + +TG+   V G      +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFKEWKTQQYILDYIGTLSNEHVEVKVWRTGVIVKVKGKNPEKVIGYRADIDGLPITEETGYEFASVHEGMMHACGHDLHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACAN (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus anthracis GN=dapL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T + +   +  +   + +  + +TG+   V G      +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFKEWKTQQYILDYIGTLSNEHVEVKVWRTGVIVKVKGKNPEKVIGYRADIDGLPITEETGYEFASVHEGMMHACGHDLHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACAH (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus thuringiensis (strain Al Hakam) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T + +   +  +   + +  + +TG+   V G      +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFKEWKTQQYILDYIGTLSNEHVEVKVWRTGVIVKVKGKNPEKVIGYRADIDGLPITEETGYEFASVHEGMMHACGHDLHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACAC (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T + +   +  +   + +  + +TG+   V G      +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFKEWKTQQYILDYIGTLSNEHVEVKVWRTGVIVKVKGKNPEKVIGYRADIDGLPITEETGYEFASVHEGMMHACGHDLHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_BACAA (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus anthracis (strain A0248) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  320 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLA 808
            +RR +H+ PE+ F+E++T + +   +  +   + +  + +TG+   V G      +  RAD+D LPI E   +E+ S   G MHACGHD H    IG   +  +    +   ++ +FQPAEE   GA  M+    L++     I  +H++ E+P G I ++ G L A
Sbjct:    9 IRRDLHKIPEIGFKEWKTQQYILDYIGTLSNEHVEVKVWRTGVIVKVKGKNPEKVIGYRADIDGLPITEETGYEFASVHEGMMHACGHDLHTT--IGLGLLTAAVTERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYPVGTIATKEGLLFA 173          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRP7 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae (strain 70585) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 55/173 (31.79%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHACGHD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M  DGA  D      + +HV  +   G I +    L AG
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEDGAFGDWLPNQFYGLHVRPDLKVGQIATNTHTLFAG 174          
BLAST of FC877780 vs. ExPASy Swiss-Prot
Match: DAPL_STRP4 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=dapL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 55/173 (31.79%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  311 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKT---GIRAWVGTGGPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED--VEAIFAVHVSHEHPTGVIGSRPGPLLAG 811
            L   RR +HQ PE+  +EF+T   L   ++++  G  +   +T   GI  ++    P   +  R D+D LPI E     + S+  G+MHACGHD H+ + +G  +  ++ E   K  ++ +FQPAEE   G   M  DGA  D   +  + +HV  +   G I +    L AG
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYLQGSQPERTIGWRTDIDGLPIVEQTGLLFASQHQGRMHACGHDFHMTIALGCLE--RALEEQPKNNLLFLFQPAEENEAGGMLMYEDGAFGDWLPDQFYGLHVRPDLKVGQIATNTHTLFAG 174          
The following BLAST results are available for this feature:
BLAST of FC877780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_STRPS7.985e-1731.79Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_BACCZ7.985e-1731.14Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_BACC17.985e-1731.14Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_BACC07.985e-1731.14Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_BACAN7.985e-1731.14Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_BACAH7.985e-1731.14Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_BACAC7.985e-1731.14Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_BACAA7.985e-1731.14Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_STRP71.043e-1631.79Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRP41.043e-1631.79Putative N-acetyldiaminopimelate deacetylase OS=St... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877780 ID=FC877780; Name=FC877780; organism=Citrus clementina; type=EST; length=828bp
TTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCT
TGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACG
CCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATC
AACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGGCGGCAGCGTCA
AGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCTGCGGAGTGTGG
AGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGAC
GGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGC
TTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGAT
CGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGC
ATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGG
ATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTG
GCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCAT
CGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTG
TAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGG
ATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCA
CGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTT
TGCTAGCCGGCTGTGGCTTTTTCCATGC
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