FC877802

Overview
NameFC877802
Unique NameFC877802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10461 contig Ccv1_Contig10461:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCN6_RABIT (Chloride transport protein 6 OS=Oryctolagus cuniculus GN=CLCN6 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.501e-19
Identity = 71/223 (31.84%), Postives = 98/223 (43.95%), Query Frame = 3
Query:  276 TNTTSQIAIVGAN------ICP---IESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINN----------LMLNDRHFMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 887
            T T  ++ I+G        I P    ESLDY+   N+ + +        +   Y V KWT+   IGV TGL  +F +FFV+     K  ++            L L+    +GF                          GSGIPE+K YLNG+    I+   TL  K+FG +F VA G  VGKEGPM+H+GA +   L Q  S           YF++DRD+
Sbjct:   23 TRTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEVLETMDHKKGRWYEVVKWTVVFAIGVCTGLVGLFVDFFVQLFTQLKFGVVEASVEECSQKGCLALSLLELLGF-------NLTFVFLASLLVLIEPVAAGSGIPEIKCYLNGVKVPGIVRLRTLLCKVFGVLFSVAGGLFVGKEGPMIHSGAVVGAGLPQFQSISLRKIQFNFPYFRSDRDK 238          
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCD_DICDI (Chloride channel protein D OS=Dictyostelium discoideum GN=clcD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 55/187 (29.41%), Postives = 85/187 (45.45%), Query Frame = 3
Query:  327 ESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 887
            E LDY  + N+  + +           + V +W ++L +G+  G+ A F +  V NI  +K   +  ++  D  F+ F+                         GSGIPEVK YLNG      L   TL+ K    +  V++G   G EGPM+H GA + N   Q  SK++     +LR F+ND+D+
Sbjct:  224 ECLDYVTIYNKAHRNELYKNFSKLASDHEVLRWIVSLFMGIFIGVIAYFSHACVSNITKYKFKFVEAVLELDL-FLAFLTYFLLNTLLATCSSLLAVYYEPTAAGSGIPEVKGYLNGTKIPHTLKMKTLWTKFLSMVLAVSSGLQAGSEGPMIHIGAIVGNGFSQAQSKEFGFKIPFLRSFRNDKDK 409          
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCN6_HUMAN (Chloride transport protein 6 OS=Homo sapiens GN=CLCN6 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.051e-17
Identity = 68/223 (30.49%), Postives = 95/223 (42.60%), Query Frame = 3
Query:  276 TNTTSQIAIVGAN------ICP---IESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINN----------LMLNDRHFMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 887
            T T  ++ I+G        I P    ESLDY+   N+ + +        +  +Y   KW +   IGV TGL  +F +FFV      K  ++            L L+    +GF                          GSGIPEVK YLNG+    I+   TL  K+ G +F VA G  VGKEGPM+H+G+ +   L Q  S           YF++DRD+
Sbjct:   23 TRTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEVLETMDNKKGRRYEAVKWMVVFAIGVCTGLVGLFVDFFVRLFTQLKFGVVQTSVEECSQKGCLALSLLELLGF-------NLTFVFLASLLVLIEPVAAGSGIPEVKCYLNGVKVPGIVRLRTLLCKVLGVLFSVAGGLFVGKEGPMIHSGSVVGAGLPQFQSISLRKIQFNFPYFRSDRDK 238          
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCN6_MOUSE (Chloride transport protein 6 OS=Mus musculus GN=Clcn6 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 61/197 (30.96%), Postives = 86/197 (43.65%), Query Frame = 3
Query:  327 ESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINN----------LMLNDRHFMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 887
            ESLDY+   N+ + +        +  +Y   KW +   IGV TGL  +F +F V      K  ++            L L+    +GF                          GSGIPE+K YLNG+    I+   TL  K+FG +F V+ G  VGKEGPM+H+GA +   L Q  S           YF++DRD+
Sbjct:   49 ESLDYDRCINDPYLEVLETMDNKKGRRYEAVKWMVVFAIGVCTGLVGLFVDFSVRLFTQLKFGVVQTSVEECSQKGCLALSLLELLGF-------NLTFVFLASLLVLIEPVAAGSGIPEIKCYLNGVKVPGIVRLRTLLCKVFGVLFSVSGGLFVGKEGPMIHSGAVVGAGLPQFQSISLRKIQFNFPYFRSDRDK 238          
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCB_DICDI (Chloride channel protein B OS=Dictyostelium discoideum GN=clcB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.415e-16
Identity = 56/190 (29.47%), Postives = 86/190 (45.26%), Query Frame = 3
Query:  327 ESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRH-FMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSK--KYHLTWRWLRYFKNDRDR 887
            ESLD+  ++N + ++    ++K +     + KW +  LIGV+ GL        V+ +   KL  +      +   F+ F+                          SG+PEVK YLNGI         T+  K+   IF  ++G V+G EGPM H GA I + + Q  SK  K+HL   W+  F+ND D+
Sbjct:   68 ESLDFNAIDNIIHRKYTFEKKKYQKILKTLGKWVICTLIGVVVGLVCYCLKESVDQLQSLKLTQVKKFYSTESTIFIPFLVYLGFNLCYGLISGLLVCIFGPMSSSSGLPEVKGYLNGIRISKAFNLKTVLGKLVSLIFSFSSGLVLGPEGPMFHIGAGIGSSMSQFKSKTLKFHLKSFWI--FQNDSDK 255          
BLAST of FC877802 vs. ExPASy Swiss-Prot
Match: CLCC_DICDI (Chloride channel protein C OS=Dictyostelium discoideum GN=clcC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.570e-13
Identity = 48/188 (25.53%), Postives = 77/188 (40.96%), Query Frame = 3
Query:  324 IESLDYEIVENELFKQDWRARRKVEIFQYVVFKWTLALLIGVLTGLAAVFCNFFVENIAGFKLLLINNLMLNDRHFMGFVANTSXXXXXXXXXXXXXXXXXXXXXGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYHLTWRWLRYFKNDRDR 887
            I+SL++ + +N L ++++    K    +    KW + L +GV+ G  A      V+ + G K    N+ + N      F+                          SGIPEVK  LNG+     L    L  KI   +   ++G  VG EGPM+H G+ +   + Q  S            ++NDRD+
Sbjct:   63 IQSLNFSVNDNLLQREEYEKTTKGLHLKKTFGKWIICLFLGVIVGCIAYVIKMVVQLLQGLKFHYTNHYVSNGLQGEAFLTFLGINLLFVFLSCLMVIVAGPLASSSGIPEVKGILNGVKVREALGFRALLGKIVSLVLSFSSGLFVGPEGPMIHIGSAVGAAISQFKSSTMGFYPSLFLSYRNDRDK 250          
The following BLAST results are available for this feature:
BLAST of FC877802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CLCN6_RABIT2.501e-1931.84Chloride transport protein 6 OS=Oryctolagus cunicu... [more]
CLCD_DICDI7.277e-1929.41Chloride channel protein D OS=Dictyostelium discoi... [more]
CLCN6_HUMAN1.051e-1730.49Chloride transport protein 6 OS=Homo sapiens GN=CL... [more]
CLCN6_MOUSE3.057e-1730.96Chloride transport protein 6 OS=Mus musculus GN=Cl... [more]
CLCB_DICDI4.415e-1629.47Chloride channel protein B OS=Dictyostelium discoi... [more]
CLCC_DICDI1.570e-1325.53Chloride channel protein C OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA24CC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877802 ID=FC877802; Name=FC877802; organism=Citrus clementina; type=EST; length=887bp
AAAAAACTTATTTCTGTTTTTGTTATTCATTGATAAAAAAAGAGATTTTC
TTTTTTATTCTTTTGGGTGTGGAATCAAAAAAGATTTGTGGGTTTGAAGA
TTGAAGGAAAATGGATCATGGAAGTAGAGGAGATAGGGAGGAGAATGATA
TAGAGGTTGAAGGAGGAGGGCATAATGGTAGTTTTGAAAGTGAAAGGAGG
AAGTTTGTTGAGAGAATGGGATCAGGAACGTCAGAGGATCATAATTTGAG
AGAGCCATTGTTGTTGAAGTGTAGGACCAATACAACTTCTCAGATTGCCA
TTGTTGGTGCCAATATCTGCCCGATTGAGTCTCTTGATTATGAGATTGTC
GAGAATGAGCTTTTTAAGCAGGACTGGAGAGCAAGACGGAAGGTTGAGAT
ATTTCAGTACGTTGTCTTCAAGTGGACACTTGCACTCCTTATTGGGGTGC
TTACAGGGCTTGCAGCCGTTTTCTGTAACTTTTTTGTTGAGAATATAGCT
GGTTTTAAACTTCTGCTTATCAACAATCTCATGCTTAATGATAGGCACTT
TATGGGATTTGTAGCAAATACGAGTATCAACCTGGGTTTGGCCATTTTAG
CTGCAATCCTTTGTGCTTATATTGCCCCTGCAGCTGCCGGCTCTGGTATA
CCCGAGGTGAAAGCATATCTCAATGGTATAGATGCCCATTCTATATTGGC
TCCAAGTACCCTCTTTGTTAAGATTTTTGGTTCCATTTTTGGAGTTGCTG
CTGGATTTGTTGTCGGTAAGGAAGGACCTATGGTACATACTGGTGCTTGC
ATAGCCAATTTACTTGGACAAGGCGGATCGAAGAAGTACCATTTGACCTG
GAGATGGCTCAGATACTTCAAAAATGATCGTGACCGG
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