FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6288 contig Ccv1_Contig6288:136..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: COQ2_YEAST (Para-hydroxybenzoate--polyprenyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=COQ2 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.726e-39
Identity = 91/219 (41.55%), Postives = 121/219 (55.25%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSI---------TMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            LP++   YA+L RL+KP+GTWLL  PC WSI         T++A  G      M+              CT+ND LDR +D  V R+  RPIASG ++P                           LG +SL +VF+YPL KRFT++PQA L   FNWGALLG+ A+ G +    + P+Y+S   W + YDTIYAHQDK+ D+K G+KSTAL +G  +K
Sbjct:   76 LPKKWIPYAELMRLEKPVGTWLLYLPCSWSILMGAMMQGATLSATAG------MLGIFGVGALVMRGAGCTINDFLDRKLDQRVIRSVERPIASGRVSPRRALVFLGAQTLVGMGVLSLLPAQCWWLGLASLPIVFTYPLFKRFTYYPQAALSACFNWGALLGFPAM-GVMSWPTMIPLYLSSYLWCMTYDTIYAHQDKKFDIKAGIKSTALAWGPRTK 287          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSYIN (4-hydroxybenzoate octaprenyltransferase OS=Psychromonas ingrahamii (strain 37) GN=ubiA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.074e-36
Identity = 82/214 (38.32%), Postives = 118/214 (55.14%), Query Frame = 1
Query:  250 IDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            ++ +   + +AY +L R++KPIGT LL WP +W++ +AA    FPD  ++              C +ND  DR+ID  VERT+ RP+ SG  T                      N+ +  L  + LLL F+YP MKRFT  PQ  LGL F+W   + +AA   +L  AVV+ ++   + WT+ YDT+YA  D+EDDLK+GVKSTA+ F  + K
Sbjct:    1 MNFFCKEKRQAYVELMRINKPIGTLLLLWPTLWALWIAAQG--FPDLGVLIVFSAGVFLMRSAGCVINDFADRNIDGFVERTKHRPLPSGRATSTEAIILFFILAIVSFLLVLTQNSLTIQLSFAGLLLAFAYPFMKRFTQLPQLVLGLAFSWSIPMAFAAQANALP-AVVWIIFAVNIIWTIAYDTLYAMVDREDDLKIGVKSTAILFASNDK 211          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SACD2 (4-hydroxybenzoate octaprenyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ubiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.455e-35
Identity = 81/204 (39.71%), Postives = 107/204 (52.45%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            AYAKL RLD+PIG +L+ WP +WS+ +AA     PD+ ++              C +ND  DR ID  V RT  RP+ +GL+TP                     N  +  L     LL F YP MKR+T  PQ  LG  F W   + +AA    L  A+ + +Y + V WT+ YDT YA  D+EDDLK+GVKSTA+ FGD  +
Sbjct:   20 AYAKLMRLDRPIGIYLVLWPTLWSLWIAADG--LPDWDVLVIFVLGVVLMRSAGCVINDFADRKIDGHVRRTANRPLVTGLITPKQAVLFFVALLVIAFILVLFTNPLTIKLSFGGALLAFCYPFMKRYTQLPQIVLGAAFAWSIPMAFAAQTNQLPEAI-WVLYTAVVLWTVAYDTFYAMADREDDLKIGVKSTAILFGDQDR 220          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VIBSL (4-hydroxybenzoate octaprenyltransferase OS=Vibrio splendidus (strain LGP32) GN=ubiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.696e-35
Identity = 78/210 (37.14%), Postives = 113/210 (53.81%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            L  +A+AY +L R+++PIGT LL WP +WS+ +AA     PDF ++              C +ND  DR +D  V+RT+ RP+ SGL++                      N  +  L    + L F YP MKRFT  PQ +LGL F+W   + WAA    L  ++V+ +++    WT+ YDT YA  D++DDLK+G+KSTA+ FG   K
Sbjct:    2 LATKAKAYWQLTRMNRPIGTLLLLWPTLWSLIIAAKG--MPDFDVLVVFILGVVLMRSAGCVINDFADRKVDGHVKRTKQRPLPSGLVSSKEAIVLFLVLAVVSFLLVLTMNPLTIKLSFIGVGLAFIYPFMKRFTHLPQLFLGLAFSWAIPMAWAAQTNELP-SIVWFIFVINALWTIAYDTQYAMVDRDDDLKIGIKSTAILFGRFDK 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_TOLAT (4-hydroxybenzoate octaprenyltransferase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=ubiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.005e-34
Identity = 77/210 (36.67%), Postives = 111/210 (52.86%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +P Q + Y +LARLDKPIGT LL WP +W++ +A+     P F ++              C +ND  DR  D  V+RT  RP+ +G LT                      N F+  L    LLL   YP MKR T  PQ  LG+ F+W   + + AV G L +   + ++++ + WT+ YDT+YA  D++DDLK+GVKSTA+ FG + +
Sbjct:    5 IPAQWQPYWQLARLDKPIGTLLLLWPTLWALWLAS--AGVPSFSLLLIFTAGVFVMRSAGCVINDYADRKFDGYVKRTASRPLPAGRLTAVRALLFFLLLVLIAFVLVWQLNQFTIYLSVGGLLLAAIYPFMKRVTSLPQVVLGMAFSWAIPMAYGAVVGQLTVTT-WLLFLANLVWTIAYDTMYAMVDRDDDLKIGVKSTAILFGQNDR 211          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VIBPA (4-hydroxybenzoate octaprenyltransferase OS=Vibrio parahaemolyticus GN=ubiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.313e-34
Identity = 76/207 (36.71%), Postives = 112/207 (54.11%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +A+AY +L R+D+PIG+ LL WP +W++ +AA     P + ++              C +ND  DR +D  V+RT+ RP+ SG +T                      N  +  L  + L+L F YP MKR+T  PQ +LGL F+W   + WAA  G L + V F +++    WT+ YDT YA  D++DDLK+G+KSTA+ FG   K
Sbjct:    5 KAKAYWQLMRMDRPIGSLLLLWPTVWALVIAAQG--IPSWDVLIVFVLGVFLMRSAGCVINDFADRKVDGHVKRTKQRPLPSGKVTAKEAIGLFLVLAVSSFLLVLTMNPLTIQLSFAGLVLAFIYPFMKRYTHIPQLFLGLAFSWAIPMAWAAQTGELPVMVWF-VFVINALWTIAYDTQYAMVDRDDDLKIGIKSTAILFGRHDK 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VIBHB (4-hydroxybenzoate octaprenyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ubiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.313e-34
Identity = 75/207 (36.23%), Postives = 111/207 (53.62%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +A+AY +L R+D+PIG+ LL WP +W++ +AA     P + ++              C +ND  DR +D  V+RT+ RP+ SG +T                      N  +  L  + + L F YP MKR+T+ PQ +LGL F+W   + WAA  G L   V F +++    WT+ YDT YA  D++DDLK+G+KSTA+ FG   K
Sbjct:    5 KAKAYWQLMRMDRPIGSLLLLWPTVWALVIAAQG--MPSWNVLIVFVLGVFLMRSAGCVINDFADRKVDGHVKRTKQRPLPSGKVTSKEAIGLFLVLGISSFLLVLTMNPLTIKLSFAGIFLAFIYPFMKRYTYLPQLFLGLAFSWAIPMAWAAQTGELPWIVWF-VFVINALWTIAYDTQYAMVDRDDDLKIGIKSTAILFGRHDK 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEMY (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas mendocina (strain ymp) GN=ubiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.313e-34
Identity = 79/203 (38.92%), Postives = 107/203 (52.71%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L RLDKPIG +LL WP +W++ +AA     P  K +              C +ND  DR+ D  V RTR RP+ASG + P                     N  +  L    L L   YP MKR+TF+PQ  LG  F+WG  + + A  GSL     + +YI+ + WT+ YDT YA  D+EDDLK+GVKSTA+ FGD+ +
Sbjct:   19 FIQLMRLDKPIGIYLLLWPTLWALWVAAEG--VPSAKNLFIFVFGVILMRAAGCVINDYADRNFDGHVSRTRARPLASGKIQPREALVLFAVLVTASFVLVLFTNATTIWLSFGGLALAACYPFMKRYTFYPQVVLGAAFSWGMPMAFTAETGSLP-PEAWLLYIANLLWTVAYDTYYAMADREDDLKIGVKSTAILFGDADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_METCA (4-hydroxybenzoate octaprenyltransferase OS=Methylococcus capsulatus GN=ubiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.714e-34
Identity = 83/218 (38.07%), Postives = 113/218 (51.83%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            +A AY +L R DKPIG +LL WP +W++ +A      PD  +               C +ND  DR+ D  VERTRLRPIA+G +T                      N  +  L      L  SYP  KR+T  PQAYLGL F W   + +AA  GS+ + V + +Y + V W L+YDT+YA  D+EDD+K+G+KSTA+ FG   +E      IA +
Sbjct:   10 RADAYWRLMRFDKPIGIFLLLWPALWALWIAGEGR--PDPGVAAVIVFGVVLMRAAGCVINDYADREFDPHVERTRLRPIAAGEVTSKEALILFMVLCLTAFALVLTMNWLTIALSVPGAFLAASYPFTKRYTHLPQAYLGLAFGWAIPMTFAAQTGSIPV-VAWALYAATVLWALIYDTMYAMVDREDDVKIGIKSTAILFGKYDREIIGALQIAML 224          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_YERE8 (4-hydroxybenzoate octaprenyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ubiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.988e-34
Identity = 79/205 (38.54%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            RAY +L R+DKPIG+ LL WP +W++ +A      PD K++              C VND  DR ID  V+RT  RP+ SGL++                      N+ +  L  ++L L + YP MKR T  PQ  LG  F W   +G+AAV  +L L V + + ++ + WT+ YDT YA  D++DDLK+GVKSTA+ FG   K
Sbjct:   11 RAYCRLMRIDKPIGSLLLLWPTLWALWLAGKG--IPDTKILIVFVLGVFFMRAAGCVVNDYADRRIDGFVKRTASRPLPSGLISERESKILFVVLVLLSFGLVLTLNSMTIWLSLAALALAWVYPFMKRVTHLPQVVLGAAFGWSIPMGFAAVSENLPL-VCWLLLLANICWTVAYDTQYAMVDRDDDLKIGVKSTAILFGQQDK 212          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
COQ2_YEAST6.726e-3941.55Para-hydroxybenzoate--polyprenyltransferase, mitoc... [more]
UBIA_PSYIN1.074e-3638.324-hydroxybenzoate octaprenyltransferase OS=Psychro... [more]
UBIA_SACD23.455e-3539.714-hydroxybenzoate octaprenyltransferase OS=Sacchar... [more]
UBIA_VIBSL7.696e-3537.144-hydroxybenzoate octaprenyltransferase OS=Vibrio ... [more]
UBIA_TOLAT1.005e-3436.674-hydroxybenzoate octaprenyltransferase OS=Tolumon... [more]
UBIA_VIBPA1.313e-3436.714-hydroxybenzoate octaprenyltransferase OS=Vibrio ... [more]
UBIA_VIBHB1.313e-3436.234-hydroxybenzoate octaprenyltransferase OS=Vibrio ... [more]
UBIA_PSEMY1.313e-3438.924-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_METCA1.714e-3438.074-hydroxybenzoate octaprenyltransferase OS=Methylo... [more]
UBIA_YERE84.988e-3438.544-hydroxybenzoate octaprenyltransferase OS=Yersini... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
back to top