FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6288 contig Ccv1_Contig6288:136..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHESW (4-hydroxybenzoate octaprenyltransferase OS=Shewanella sp. (strain W3-18-1) GN=ubiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.515e-34
Identity = 76/214 (35.51%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            Y++L RLD+PIGT LL WPC+ ++ +AA  G  PD K++              C +ND  DRD+D+ VERT+ RP+ASG ++                      N     L    ++L   YP  KR T  PQ +LG+ ++W   + +AA  G + +   + ++ +  FWT+ YDT+YA  D++DDLKVG+KSTA+ FG   ++    F IA +
Sbjct:   10 YSRLTRLDRPIGTLLLMWPCLMALMLAA--GGMPDLKVLIIFIIGVVIMRACGCIINDYADRDLDSFVERTKSRPLASGEISTKEALILFVVLGLSAFGLVLLLNGLVVKLSVVGIILTIIYPFTKRITNMPQMFLGVVWSWSIPMAYAAQTGEVPMEAWW-LFAANWFWTVAYDTMYAMVDRDDDLKVGIKSTAILFGKYDRQIIGLFQIAAL 220          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHEPC (4-hydroxybenzoate octaprenyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=ubiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.515e-34
Identity = 76/214 (35.51%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            Y++L RLD+PIGT LL WPC+ ++ +AA  G  PD K++              C +ND  DRD+D+ VERT+ RP+ASG ++                      N     L    ++L   YP  KR T  PQ +LG+ ++W   + +AA  G + +   + ++ +  FWT+ YDT+YA  D++DDLKVG+KSTA+ FG   ++    F IA +
Sbjct:   10 YSRLTRLDRPIGTLLLMWPCLMALMLAA--GGMPDLKVLIIFIIGVVIMRACGCIINDYADRDLDSFVERTKSRPLASGEISTKEALILFVVLGLSAFGLVLLLNGLVVKLSVVGIILTIIYPFTKRITNMPQMFLGVVWSWSIPMAYAAQTGEVPMEAWW-LFAANWFWTVAYDTMYAMVDRDDDLKVGIKSTAILFGKYDRQIIGLFQIAAL 220          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEA7 (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=ubiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.515e-34
Identity = 72/203 (35.47%), Postives = 112/203 (55.17%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + +L RLD+PIG +LL WP +WS+ +AA  G  P+ K +              C +ND  DRD D  V RT+ RP+A+G ++                      N  +  L   ++ +   YP MKR+T++PQ  LG  ++WG L+ + A +G L  A  + ++++ V WT+ YD+ YA  D+EDDLK+G+KSTA+ FGD+ +
Sbjct:   19 FVQLVRLDRPIGIYLLLWPTLWSLWIAA--GGVPELKNLLIFVLGVTLMRAAGCVINDFADRDFDGHVARTKARPLATGKISVREAWITFTILVALSFGLVLLTNAPTIWLSFGAVAVASLYPFMKRYTYYPQVVLGAAYSWGILMAFTAERGELP-ASAWLLFLANVLWTVAYDSYYAMTDREDDLKIGIKSTAILFGDADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHESR (4-hydroxybenzoate octaprenyltransferase OS=Shewanella sp. (strain MR-7) GN=ubiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.111e-33
Identity = 74/204 (36.27%), Postives = 111/204 (54.41%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKE 894
            Y++L RLD+PIGT LL WPC+ ++ +AA  G  PD K++              C +ND  DRD+D+ VERTR RP+ASG ++                      N     L    ++L   YP  KR T  PQ +LG+ ++W   + +AA  G + +   + ++ +  FWT+ YDT+YA  D++DDLKVG+KSTA+ FG   ++
Sbjct:   10 YSRLTRLDRPIGTLLLLWPCLMALVLAA--GGMPDIKVLIIFIIGVVIMRACGCIINDYADRDLDSHVERTRSRPLASGEISTKEALLLFVILGLAAFGLVLLLNGLVVKLSVVGIILTIIYPFTKRVTNMPQMFLGVVWSWSIPMAYAAQTGEVPIEAWW-LFAANWFWTVAYDTMYAMVDRDDDLKVGIKSTAILFGQYDRQ 210          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHESM (4-hydroxybenzoate octaprenyltransferase OS=Shewanella sp. (strain MR-4) GN=ubiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.111e-33
Identity = 74/204 (36.27%), Postives = 111/204 (54.41%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKE 894
            Y++L RLD+PIGT LL WPC+ ++ +AA  G  PD K++              C +ND  DRD+D+ VERTR RP+ASG ++                      N     L    ++L   YP  KR T  PQ +LG+ ++W   + +AA  G + +   + ++ +  FWT+ YDT+YA  D++DDLKVG+KSTA+ FG   ++
Sbjct:   10 YSRLTRLDRPIGTLLLLWPCLMALVLAA--GGMPDIKVLIIFIIGVVIMRACGCIINDYADRDLDSHVERTRSRPLASGEISTKEALLLFVILGLAAFGLVLLLNGLVVKLSVVGIILTIIYPFTKRVTNMPQMFLGVVWSWSIPMAYAAQTGEVPIEAWW-LFAANWFWTVAYDTMYAMVDRDDDLKVGIKSTAILFGQYDRQ 210          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHEON (4-hydroxybenzoate octaprenyltransferase OS=Shewanella oneidensis GN=ubiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.451e-33
Identity = 75/214 (35.05%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            Y++L RLD+PIGT LL WPC+ ++ +AA  G  PD K++              C +ND  DRD+D+ VERT+ RP+ASG ++                      N     L    ++L   YP  KR T  PQ +LG+ ++W   + +AA  G + +   + ++ +  FWT+ YDT+YA  D++DDLK+G+KSTA+ FG   ++    F IA +
Sbjct:   10 YSRLTRLDRPIGTLLLLWPCLMALVLAA--GGMPDLKVLIIFIIGVVIMRACGCIINDYADRDLDSHVERTKSRPLASGEISTKEALLLFVILGLAAFGLVLLLNGLVVKLSVVGIILTIIYPFTKRVTNMPQMFLGVVWSWSIPMAYAAQTGEVPIEAWW-LFAANWFWTVAYDTMYAMVDRDDDLKIGIKSTAILFGKYDRQIIGLFQIAAL 220          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VIBVY (4-hydroxybenzoate octaprenyltransferase OS=Vibrio vulnificus (strain YJ016) GN=ubiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.896e-33
Identity = 76/207 (36.71%), Postives = 111/207 (53.62%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +A+AY +L R+D+PIGT LL WP +W++ +AA     PD+ ++              C +ND  DR +D  V+RT+ RP+ SG +T                      N  +  L  + ++L F YP MKR+T  PQ +LGL F+W   + WAA    L   V F   I+ + WT+ YDT YA  D++DD+++GVKSTA+ FG   K
Sbjct:    5 KAKAYWQLMRMDRPIGTLLLLWPTLWALIIAAEGT--PDWHVLLVFVLGVVLMRSAGCVINDFADRKVDGHVKRTQQRPLPSGRVTAKEAVILFLLLGISSFLLVLTMNPLTIQLSFAGIVLAFIYPFMKRYTHLPQLFLGLAFSWAIPMAWAAQANELPWVVWFVFAINAL-WTIAYDTQYAMVDRDDDIQIGVKSTAILFGRHDK 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VIBCM (4-hydroxybenzoate octaprenyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=ubiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.896e-33
Identity = 74/203 (36.45%), Postives = 109/203 (53.69%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            +ARAY +L R+D+PIG+ LL WP +W++ +AA     PD +++              C +ND  DR +D  V+RT  RP+ +GL++                      N  +  L    +LL F YP MKRFT  PQ  LGL F+W   + WAA   +L    V+ +++    WT+ YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:    5 KARAYWQLMRMDRPIGSLLLLWPTLWALLLAAQG--LPDLRVLVVFVLGVFLMRSAGCVINDYADRHVDGHVKRTSQRPLPAGLVSAKEALLLFVLLAVSSFLLVLTMNTLTIQLSFIGILLAFVYPFMKRFTHLPQLVLGLAFSWSIPMAWAAQANTLT-PQVWVLFLINALWTIAYDTQYAMVDRDDDVKIGIKSTAILFG 204          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VIBCH (4-hydroxybenzoate octaprenyltransferase OS=Vibrio cholerae GN=ubiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.896e-33
Identity = 74/203 (36.45%), Postives = 109/203 (53.69%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            +ARAY +L R+D+PIG+ LL WP +W++ +AA     PD +++              C +ND  DR +D  V+RT  RP+ +GL++                      N  +  L    +LL F YP MKRFT  PQ  LGL F+W   + WAA   +L    V+ +++    WT+ YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:    5 KARAYWQLMRMDRPIGSLLLLWPTLWALLLAAQG--LPDLRVLVVFVLGVFLMRSAGCVINDYADRHVDGHVKRTSQRPLPAGLVSAKEALLLFVLLAVSSFLLVLTMNTLTIQLSFIGILLAFVYPFMKRFTHLPQLVLGLAFSWSIPMAWAAQANTLT-PQVWVLFLINALWTIAYDTQYAMVDRDDDVKIGIKSTAILFG 204          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VIBC3 (4-hydroxybenzoate octaprenyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ubiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.896e-33
Identity = 74/203 (36.45%), Postives = 109/203 (53.69%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            +ARAY +L R+D+PIG+ LL WP +W++ +AA     PD +++              C +ND  DR +D  V+RT  RP+ +GL++                      N  +  L    +LL F YP MKRFT  PQ  LGL F+W   + WAA   +L    V+ +++    WT+ YDT YA  D++DD+K+G+KSTA+ FG
Sbjct:    5 KARAYWQLMRMDRPIGSLLLLWPTLWALLLAAQG--LPDLRVLVVFVLGVFLMRSAGCVINDYADRHVDGHVKRTSQRPLPAGLVSAKEALLLFVLLAVSSFLLVLTMNTLTIQLSFIGILLAFVYPFMKRFTHLPQLVLGLAFSWSIPMAWAAQANTLT-PQVWVLFLINALWTIAYDTQYAMVDRDDDVKIGIKSTAILFG 204          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBIA_SHESW6.515e-3435.514-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]
UBIA_SHEPC6.515e-3435.514-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]
UBIA_PSEA76.515e-3435.474-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_SHESR1.111e-3336.274-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]
UBIA_SHESM1.111e-3336.274-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]
UBIA_SHEON1.451e-3335.054-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]
UBIA_VIBVY1.896e-3336.714-hydroxybenzoate octaprenyltransferase OS=Vibrio ... [more]
UBIA_VIBCM1.896e-3336.454-hydroxybenzoate octaprenyltransferase OS=Vibrio ... [more]
UBIA_VIBCH1.896e-3336.454-hydroxybenzoate octaprenyltransferase OS=Vibrio ... [more]
UBIA_VIBC31.896e-3336.454-hydroxybenzoate octaprenyltransferase OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
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