FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6288 contig Ccv1_Contig6288:136..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_LEGPA (4-hydroxybenzoate octaprenyltransferase OS=Legionella pneumophila (strain Paris) GN=ubiA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.778e-23
Identity = 71/201 (35.32%), Postives = 97/201 (48.26%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASG--LLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRF 876
            AY +L RL+KPIG  LL +P  W++ MA     FP   ++              C +ND+ DR ID  V RT+ RP+ SG   L+                      N F       S+L+ F YP  KRF   PQ  LGL F+ G  + + A   +L+   V  +++    W + YDT+YA  DK DDLK+GVKSTA+ F
Sbjct:    6 AYVRLLRLNKPIGILLLWYPTAWALWMANQG--FPSIDLLMIFLLGTVFMRSAGCVINDIADRHIDRHVARTQFRPLTSGEVSLSEAFILLFILLCASLLLLLKLPINCF--YFAVISVLITFVYPFCKRFLNAPQLILGLAFSMGIPMAFIASGKNLNSDFVV-LFLINFTWIIAYDTMYAMTDKADDLKIGVKSTAIYF 201          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_LEGPL (4-hydroxybenzoate octaprenyltransferase OS=Legionella pneumophila (strain Lens) GN=ubiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.323e-23
Identity = 74/203 (36.45%), Postives = 98/203 (48.28%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASG--LLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSL--DLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRF 876
            AY +L RL+KPIG  LL +P  W++ MA     FP   ++              C +ND+ DR ID  V RT+ RP+ SG   L+                      N F       S+L+ F YP  KRF   PQ  LGL F+ G  + + A   +L  D  V+F +  S   W + YDT+YA  DK DDLK+GVKSTA+ F
Sbjct:    6 AYVRLLRLNKPIGILLLWYPTAWALWMANQG--FPSIDLLMIFLLGTVFMRSAGCVINDIADRHIDRHVARTQFRPLTSGEVSLSEAFILLFILLCASLFLLLKLPINCF--YFAVISVLITFLYPFCKRFFNAPQLVLGLAFSMGIPMAFIASGKNLNSDFIVLFLINFS---WIIAYDTMYAMTDKADDLKIGVKSTAIYF 201          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_LEGPH (4-hydroxybenzoate octaprenyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=ubiA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.962e-23
Identity = 73/203 (35.96%), Postives = 98/203 (48.28%), Query Frame = 1
Query:  280 AYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASG--LLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSL--DLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRF 876
            AY +L RL+KPIG  LL +P  W++ MA     FP   ++              C +ND+ DR ID  V RT+ RP+ +G   L+                      N F       S+L+ F YP  KRF   PQ  LGL F+ G  + + A   +L  D  V+F +  S   W + YDT+YA  DK DDLK+GVKSTA+ F
Sbjct:    6 AYVRLLRLNKPIGILLLWYPTAWALWMANQG--FPSIDLLMIFLLGTVFMRSAGCVINDIADRHIDRHVARTQFRPLTAGEVSLSEAFILLFILLCASLLLLLKLPINCF--YFAVISVLITFLYPFCKRFLNAPQLILGLAFSMGIPMAFIASGKNLNSDFIVLFLINFS---WIIAYDTMYAMTDKADDLKIGVKSTAIYF 201          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_POLSJ (4-hydroxybenzoate octaprenyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=ubiA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.568e-22
Identity = 61/206 (29.61%), Postives = 103/206 (50.00%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            L R+   Y  L R ++P G  LL WP + ++ +A+    FP + ++              C VND+ DRD D  V+RT  RP+ SG ++                      N  +     ++L +  +YP  KR+   PQA LG+ F++G  + +AAV+  + L + + + +  + W + YDT YA  D++DDLK+G+K++A+  G
Sbjct:    2 LRRKLGLYLALIRWNRPAGWLLLLWPTLSALWVASHG--FPGWHLLTVFTLGTILMRSAGCCVNDVADRDFDRHVKRTAQRPVTSGQVSVREALVLGAVLALLAFGLVLTTNAATIAWSFAALAVTLAYPFAKRYVSMPQAVLGVAFSFGIPMAFAAVQSRVPL-LAWVLLLGNLCWVIAYDTEYAMVDRDDDLKIGMKTSAITLG 204          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_BLOFL (4-hydroxybenzoate octaprenyltransferase OS=Blochmannia floridanus GN=ubiA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.354e-22
Identity = 60/204 (29.41%), Postives = 99/204 (48.53%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRI-LGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            + KL R+ +P+G +LL WP +W++ +       PDF ++              C +ND +D DID  V+RT  RPI  G +                       NN   + L    L L   YP +KR+ + PQ  LG+ F+W  L+ +  +  +++    + ++++   W ++YDT YA  D++DD  +G+KS+AL FG   K
Sbjct:    8 FIKLMRVHQPVGFFLLLWPTLWALWITNRG--IPDFIVLSLFIVGVMCMRSAGCVINDYIDYDIDMCVQRTIRRPIVIGSVKKQEALWVFFILILIALIVVCVFNNIIAVFLSLIVLGLSIIYPYLKRYIYLPQLVLGIIFSWSILIVYTVMNCAVN-KTTWLLFLANTIWVVLYDTEYAMVDRDDDKCIGIKSSALLFGKIDK 208          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBIA_LEGPA1.778e-2335.324-hydroxybenzoate octaprenyltransferase OS=Legione... [more]
UBIA_LEGPL2.323e-2336.454-hydroxybenzoate octaprenyltransferase OS=Legione... [more]
UBIA_LEGPH3.962e-2335.964-hydroxybenzoate octaprenyltransferase OS=Legione... [more]
UBIA_POLSJ2.568e-2229.614-hydroxybenzoate octaprenyltransferase OS=Polarom... [more]
UBIA_BLOFL3.354e-2229.414-hydroxybenzoate octaprenyltransferase OS=Blochma... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
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