FC877882

Overview
NameFC877882
Unique NameFC877882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6288 contig Ccv1_Contig6288:136..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHESA (4-hydroxybenzoate octaprenyltransferase OS=Shewanella sp. (strain ANA-3) GN=ubiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.896e-33
Identity = 75/214 (35.05%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            Y++L RLD+PIGT LL WPC+ ++ +AA  G  PD K++              C +ND  DRD+D+ VERT+ RP+ASG ++                      N     L    ++L   YP  KR T  PQ +LG+ ++W   + +AA  G + +   + ++ +  FWT+ YDT+YA  D++DDLKVG+KSTA+ FG   ++    F +A +
Sbjct:   10 YSRLTRLDRPIGTLLLLWPCLMALVLAA--GGMPDIKVLIIFIIGVVIMRACGCIINDYADRDLDSHVERTKSRPLASGEISTKEALLLFVILGLAAFGLVLLLNGLVVKLSVVGIILTIIYPFTKRVTNMPQMFLGVVWSWSIPMAYAAQTGEVPIEAWW-LFAANWFWTVAYDTMYAMVDRDDDLKVGIKSTAILFGKYDRQIIGLFQLAAL 220          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHEHH (4-hydroxybenzoate octaprenyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ubiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.896e-33
Identity = 75/214 (35.05%), Postives = 114/214 (53.27%), Query Frame = 1
Query:  283 YAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            Y +LAR+D+PIGT LL WPC+ ++T AA  G  PD K+               C +ND  DRD+D+ VERT+ RP+ASG ++                      N     L    ++L   YP  KR+T  PQ +LG  ++W   + +AA  G++ +   + ++ +   WT+ YDT+YA  D++DDLKVG+KSTA+ FG   ++    F +A +
Sbjct:   10 YMRLARMDRPIGTLLLLWPCLMALTFAA--GGLPDLKVFIIFVIGVVVMRACGCIINDYADRDLDSHVERTKARPLASGEISSKEALLLFGVMGLFAFSLVLMLNPLVVQLSVVGIILTIIYPFTKRYTNMPQMFLGTVWSWSIPMAYAAQTGTVPIEAWW-LFAANWCWTVAYDTMYAMVDRDDDLKVGIKSTAILFGRYDRQIIAAFQLAAL 220          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_SHEB5 (4-hydroxybenzoate octaprenyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=ubiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.896e-33
Identity = 76/221 (34.39%), Postives = 117/221 (52.94%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 924
            L R+   Y++L R+D+PIGT LL WPC+ ++ +AA  G  PD K++              C +ND  DRD+D+ VERTR RP+ASG ++                      N     L    ++L   YP  KR T  PQ +LG+ ++W   + +AA  G + +   + ++ +   WT+ YDT+YA  D++DDLKVG+KSTA+ FG   ++    F +A +
Sbjct:    3 LKRKWDVYSRLTRIDRPIGTLLLLWPCLMALMLAA--GGMPDLKVLVIFIIGVVIMRACGCIINDYADRDLDSFVERTRSRPLASGEISTKEALILFVILGLSAFGLVLLLNGLVVKLSVVGIILTIIYPFTKRITNMPQMFLGIVWSWSIPMAYAAQTGEVPMEAWW-LFAANWCWTVAYDTMYAMVDRDDDLKVGIKSTAILFGKYDRQIIGLFQLAAL 220          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_HALHL (4-hydroxybenzoate octaprenyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ubiA PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.896e-33
Identity = 75/202 (37.13%), Postives = 112/202 (55.45%), Query Frame = 1
Query:  277 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGD 882
            R YA+LARLD+PIG +LL WP +W++ +AA     PD  ++              C +ND  DR ID  V+RTR RP A+G ++                      N  + ++   +++L  +YP  KR+T  PQ +LGL F W   + +AA  G++ + V + + I+ V W  VYDT+YA  D++DD+K+GVKSTA+ FGD
Sbjct:    2 RTYAQLARLDRPIGNFLLLWPVLWALWIAA--AGVPDLDLLVIFTLGVVVMRAAGCVINDFADRHIDGHVKRTRQRPFATGRVSEREALLLFVVLCLLAFGLVLLTNPLTILMSLVAVVLAATYPFTKRYTHLPQVHLGLAFGWAVPMVFAAQTGTVPV-VAWLLLIATVLWATVYDTMYAMVDRDDDIKIGVKSTAVLFGD 200          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_THICR (4-hydroxybenzoate octaprenyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=ubiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.476e-33
Identity = 77/211 (36.49%), Postives = 111/211 (52.61%), Query Frame = 1
Query:  268 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLA--VVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSKE 894
            +Q +AY +L R+D+PIG +L+ WP +W++ +AA     P   ++              C +ND  DR  D  V RT  RP+A+G LT                      N F+ +L   ++ L   YP MKR TFWPQA+LG  F W   + +AA++  +     V+F + +    W LVYDT YA  DKEDD+K+G+KSTA+ FGD  +E
Sbjct:    5 QQLQAYLQLTRIDRPIGIYLVLWPALWALWLAADG--MPPMSILIIFILGAVIMRSAGCVINDYADRHFDGYVTRTCARPLATGQLTERQALKFFFVLCLLAFGLVLFLNPFTILLSLGAVGLAILYPFMKRHTFWPQAFLGAAFAWAIPMAFAAIQNQVPWQAWVIFGVTL---VWALVYDTAYAVADKEDDVKLGIKSTAILFGDRVQE 210          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_PSEU2 (4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ubiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.233e-33
Identity = 75/210 (35.71%), Postives = 110/210 (52.38%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            L  +A  + +L R+DKPIG +LL WP +W++ +A      P  + +              C +ND  DR +D  V+RT  RP+ SG ++P                     N  +  L    L L  SYP MKR+T++PQ  LG  F+WG  + + A  G L  A  + +YI+ + WT+ YDT YA  D++DDLK+GVKSTA+ FGD+ +
Sbjct:   12 LSPRAWDFIQLTRIDKPIGVYLLLWPTLWAVWIAGKGA--PSLQTVCIFVLGVFLMRAAGCVINDFADRKVDGHVKRTEQRPLVSGKVSPREALVLFAVLVGLSFVLVLFTNAATIWLSFGGLALAASYPFMKRYTYYPQVVLGAAFSWGMPMAFTAETGELP-AAAWLLYIANLLWTVGYDTYYAMVDRDDDLKIGVKSTAVLFGDADR 218          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_COXB1 (4-hydroxybenzoate octaprenyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=ubiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.233e-33
Identity = 76/206 (36.89%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            L +Q   Y +L R DKP+G +LL WP +W++ +AA     P FK+               C VND  DR +D  V+RT++RP+ASG ++                      N  +  L    +LL   YP +KRFT  PQ +LG+ F+W   + +AA  G +  AV + ++ + V W +VYDT YA  D+EDD+KVG+KSTA+ FG
Sbjct:    4 LRQQIPHYLRLMRFDKPVGIFLLLWPTLWAVWIAAKGA--PSFKIAVIFIAGSVVMRAAGCIVNDFADRHLDKHVQRTQMRPLASGSVSVTEAMLLFAVLSLIAFTLVLLLNRLTVELAVIGILLALVYPFLKRFTHLPQLWLGIAFSWSIPMAFAATVGHVP-AVAWLLFFAAVLWPIVYDTQYAMIDREDDVKVGIKSTAILFG 206          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_VIBVU (4-hydroxybenzoate octaprenyltransferase OS=Vibrio vulnificus GN=ubiA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.223e-33
Identity = 76/207 (36.71%), Postives = 110/207 (53.14%), Query Frame = 1
Query:  271 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSSK 891
            +A+AY +L R+D+PIGT LL WP +W++ +AA     PD+ ++              C +ND  DR +D  V+RT+ RP+ SG +T                      N  +  L  + ++L F YP MKR+T  PQ +LGL F+W   + WAA    L   V F   I+ + WT+ YDT YA  D++DD+ +GVKSTA+ FG   K
Sbjct:    5 KAKAYWQLMRMDRPIGTLLLLWPTLWALIIAAEGT--PDWHVLLVFVLGVVLMRSAGCVINDFADRKVDGHVKRTQQRPLPSGRVTAKEAIILFLLLGISSFLLVLTMNPLTIQLSFAGIVLAFIYPFMKRYTHLPQLFLGLAFSWAIPMAWAAQANELPWVVWFVFAINAL-WTIAYDTQYAMVDRDDDVHIGVKSTAILFGRHDK 208          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_COXBU (4-hydroxybenzoate octaprenyltransferase OS=Coxiella burnetii GN=ubiA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.223e-33
Identity = 76/206 (36.89%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            L +Q   Y +L R DKP+G +LL WP +W++ +AA     P FK+               C VND  DR +D  V+RT++RP+ASG ++                      N  +  L    +LL   YP +KRFT  PQ +LG+ F+W   + +AA  G +  AV + ++ + V W +VYDT YA  D+EDD+KVG+KSTA+ FG
Sbjct:    4 LRQQMPHYLRLMRFDKPVGIFLLLWPTLWAVWIAAKGA--PSFKIAVIFIAGSVVMRAAGCIVNDFADRHLDKHVQRTQMRPLASGSVSVTEAMLLFAVLSLIAFTLVLLLNRLTVELAVIGILLALVYPFLKRFTHLPQLWLGVAFSWSIPMAFAATVGHVP-AVAWLLFFAAVLWPIVYDTQYAMIDREDDVKVGIKSTAILFG 206          
BLAST of FC877882 vs. ExPASy Swiss-Prot
Match: UBIA_COXBR (4-hydroxybenzoate octaprenyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=ubiA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.223e-33
Identity = 76/206 (36.89%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  262 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPPGHFPDFKMMXXXXXXXXXXXXXXCTVNDLLDRDIDNMVERTRLRPIASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFG 879
            L +Q   Y +L R DKP+G +LL WP +W++ +AA     P FK+               C VND  DR +D  V+RT++RP+ASG ++                      N  +  L    +LL   YP +KRFT  PQ +LG+ F+W   + +AA  G +  AV + ++ + V W +VYDT YA  D+EDD+KVG+KSTA+ FG
Sbjct:    4 LRQQMPHYLRLMRFDKPVGIFLLLWPTLWAVWIAAKGA--PSFKIAVIFIAGSVVMRAAGCIVNDFADRHLDKHVQRTQMRPLASGSVSVTEAMLLFAVLSLIAFTLVLLLNRLTVELAVIGILLALVYPFLKRFTHLPQLWLGVAFSWSIPMAFAATVGHVP-AVAWLLFFAAVLWPIVYDTQYAMIDREDDVKVGIKSTAILFG 206          
The following BLAST results are available for this feature:
BLAST of FC877882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBIA_SHESA1.896e-3335.054-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]
UBIA_SHEHH1.896e-3335.054-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]
UBIA_SHEB51.896e-3334.394-hydroxybenzoate octaprenyltransferase OS=Shewane... [more]
UBIA_HALHL1.896e-3337.134-hydroxybenzoate octaprenyltransferase OS=Halorho... [more]
UBIA_THICR2.476e-3336.494-hydroxybenzoate octaprenyltransferase OS=Thiomic... [more]
UBIA_PSEU23.233e-3335.714-hydroxybenzoate octaprenyltransferase OS=Pseudom... [more]
UBIA_COXB13.233e-3336.894-hydroxybenzoate octaprenyltransferase OS=Coxiell... [more]
UBIA_VIBVU4.223e-3336.714-hydroxybenzoate octaprenyltransferase OS=Vibrio ... [more]
UBIA_COXBU4.223e-3336.894-hydroxybenzoate octaprenyltransferase OS=Coxiell... [more]
UBIA_COXBR4.223e-3336.894-hydroxybenzoate octaprenyltransferase OS=Coxiell... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877882 ID=FC877882; Name=FC877882; organism=Citrus clementina; type=EST; length=925bp
CGCGTTTTCCGGAGGAGCAGATACCTAAAACCATCGTTGTCTCTTCTCCT
CAGCGGCAACAACAATCCATCTAATCCAGTCCTAAACCCTAAACTTAGCC
CTCATGTAGCCAAATTGACGAATCATTACCGTTGGATGCCAAATTCTGAA
CAAAATTTCAGATACGCATGGGTAGCAAGCATCTGTACAACACCGTCGCA
GTCAAGTGTTGAGAAAGAGACTAGTAGTAGTAATGAGAAATCATCGTGGA
TTGACTTGTATTTGCCGAGACAAGCGAGGGCTTATGCGAAGCTGGCTCGG
CTTGATAAGCCGATCGGGACGTGGCTGCTGGCTTGGCCTTGTATGTGGTC
AATTACAATGGCGGCGCCACCTGGACACTTTCCGGATTTCAAAATGATGG
CGCTCTTTGGCTGTGGCGCTCTCCTTCTACGCGGGGCCGGGTGTACCGTT
AATGACCTCCTTGATAGGGATATTGATAATATGGTGGAACGCACAAGGTT
AAGGCCCATTGCGAGTGGTCTTCTAACACCGTTTCAAGGACTTTCTTTTC
TTGGGTTTCAATTGCTTTTAGGTCTTGGGATTCTTCTCCAGTTGAATAAT
TTTAGCCGCATTCTGGGGGCTTCATCTTTGCTGTTAGTCTTCTCCTACCC
CCTCATGAAGAGGTTTACTTTTTGGCCTCAAGCCTATCTAGGTTTGACCT
TCAACTGGGGAGCCTTATTAGGATGGGCTGCAGTCAAAGGGAGTTTAGAT
CTGGCTGTTGTGTTCCCAATGTACATTTCTGGAGTTTTTTGGACTCTCGT
GTATGATACAATATATGCACATCAGGATAAAGAAGATGATTTGAAAGTTG
GTGTAAAATCTACTGCTTTGAGATTTGGGGATTCTTCTAAGGAATGGACT
ACTGGGTTCGGAATTGCATGCATAA
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