FC877889

Overview
NameFC877889
Unique NameFC877889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length810
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15154 contig Ccv1_Contig15154:4..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_OCEIH (Phosphoadenosine phosphosulfate reductase OS=Oceanobacillus iheyensis GN=cysH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 52/173 (30.06%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  293 EEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVE-KHFGIRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGAG-----RWGW 787
            ++ ++ +  + E     +I+  A E +G DI  A S GAE + LI+    T +   +  LDT     ETY   ++++ K+  + I    PD  +E QA      L+    D   +CC +RK++PL  AL G  AWI+G R++QS  +RS+   +  D  F+         W W
Sbjct:   13 KDPYKDWFPDDETNGASKILQWAYEVYGTDIVYACSFGAEGMVLIDLISKTQKNADIVFLDTDLHFQETYDLIEDIKVKYPTLNIHIKKPDLTLEEQAAEHGSALWKRQPD---QCCYIRKIKPLEDALSGAPAWISGLRREQSV-SRSKTDFINKDERFKSIKVCPLIHWTW 181          
BLAST of FC877889 vs. ExPASy Swiss-Prot
Match: CYSH_RHOOB (Phosphoadenosine phosphosulfate reductase OS=Rhodococcus opacus (strain B4) GN=cysH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.230e-11
Identity = 51/160 (31.87%), Postives = 75/160 (46.88%), Query Frame = 2
Query:  314 AKELENASPLEIMDRALEKFGNDIA---------IAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA-VEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVF 763
            A  LE AS  E++    E FG+  +         I  S  +D  L+  A        V  LDTG    ET    D VE+ +G+ +     +A V  Q     K LF+   +    CC +RKV PL++ L G +AW+TG R+ ++P TR+  P++  D  F
Sbjct:   21 AASLEGASARELLQWTEETFGSGASEGTGYRNSFIVASNMQDGVLVHLAAQVHPGVDVLFLDTGYHFAETIGTRDAVEQVYGVNVINARAEASVAEQDAAEGKDLFAREPN---RCCALRKVAPLKKTLAGYKAWVTGIRRVEAP-TRANAPLISFDDAF 176          
The following BLAST results are available for this feature:
BLAST of FC877889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CYSH_OCEIH3.694e-1130.06Phosphoadenosine phosphosulfate reductase OS=Ocean... [more]
CYSH_RHOOB8.230e-1131.88Phosphoadenosine phosphosulfate reductase OS=Rhodo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877889 ID=FC877889; Name=FC877889; organism=Citrus clementina; type=EST; length=810bp
CAAACATAAACACAAACACAAACACAAAATTTCAATAATCATGGCCCTGG
CTGTAACTTCTTCAAATTCAATTTCAAGCTCCAGTTTTGCTCTTTCTAGT
TCTTCAAATGACATTAAAGTTTCACAAATCGGTTCTTTCCGGTTAGTGGA
CCGGGCACACGTGGCTTCCACGAGCCTCTCTCAACGACGTAGTTTAGTAA
GACCGTTGAATGCCGAGCCAAAACGAAACGATTCCGTGGTGCCTCTGGCA
GCAACTCTCGCTACCCCTGAAGTGGCGGAGAAAGTAGAAGGGGAGGAGGA
TTTTGAGCAATTTGCTAAGGAGCTTGAAAATGCGTCACCTCTTGAAATCA
TGGATAGAGCTCTTGAAAAGTTTGGAAATGACATAGCGATTGCTTTCAGT
GGTGCTGAAGATGTTGCTTTGATCGAGTATGCCCATTTAACTGGTAGACC
ATTTAGGGTGTTTAGCCTGGATACTGGAAGGCTAAACCCAGAAACATATA
GATTCTTTGACGAAGTTGAGAAACATTTTGGCATACGTATTGAATACATG
TTTCCCGATGCTGTTGAAGTTCAGGCATTAGTGAGGAGCAAGGGGCTCTT
CTCTTTCTATGAGGATGGGCACCAGGAGTGCTGCCGTGTGAGGAAAGTGA
GGCCCCTTCGGAGGGCCCTCAAGGGATTGCGTGCCTGGATCACTGGCCAA
AGGAAAGATCAGTCTCCAGGTACTAGGTCTGAAATCCCTGTAGTCCAGGT
GGATCCAGTTTTTGAAGGGGCTGGAAGGTGGGGTTGGCAGCCTGGTGAAA
TGGAATCCAG
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