FC877890

Overview
NameFC877890
Unique NameFC877890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877890_ssr641 microsatellite FC877890_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:26..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_CRYNE (Eukaryotic translation initiation factor 3 subunit G OS=Cryptococcus neoformans GN=TIF35 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 71/213 (33.33%), Postives = 101/213 (47.42%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFG-DAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFI-------DKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDE-NSVRVTNLSEDTREPDLLELFRPF 811
            P      D NG+  ++ +K+N D  KVK+    R R+L  + +++   ER+ W KFG D  +     R T +  E +  +   AP SK +  +   ++  +   G AV  VCR C   G H+T+RCPF++  A  +                       G T G YVPP  RAGA   G  M R  DE  ++RVT+LS D  E DL  LF+PF
Sbjct:   22 PPTTESTDANGITTIVSWKYNADDQKVKVTRRVR-RRLQVSTVTQTMAERKQWPKFGLDKGKPPGPDRKTTIIGENLHFKI--APISKIQRVEPEPETAVKAPTGKAV--VCRLCS--GQHYTARCPFREQLAAIDNLNADGAEEEQVVVSGTLAAKGAGETGGKYVPPSQRAGATGAGDSMFRARDELPTLRVTSLSIDAEEDDLRALFQPF 227          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROWI (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila willistoni GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 68/208 (32.69%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P K+ I   E   K V EYK+N+DG K+K+    +++K     +SK   +RRNW KFG++  +  G  S+ TM + E  +L      GSK  E +   +     GK    +  CR C   G+HW+  CP+K  A  ++T ++              + G YVPP ++ G        R R+D ++VR++NLSE   E DL EL +  G
Sbjct:   22 PAKEYI---EGEYKYVTEYKYNEDGKKIKVVRTFKIKKQV---VSKAVAKRRNWVKFGESSSDKPGPNSQTTMAAEEIFMLFM----GSK--EFEQTNELQIDPGKN---IAKCRICN--GEHWSVNCPYKGTAMDSKTMMENKATAAAAAVGDPKS-GKYVPPFLKEGGASGKPWARERDDSSAVRISNLSESMTEVDLEELVKKIG 211          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROWI (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila willistoni GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 67/199 (33.67%), Postives = 100/199 (50.25%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++ G  MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGESKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPSKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-LMEKKAAAAASAAVDAPKSGKYVPPFLK-DSQKGGMGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROER (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila erecta GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 69/203 (33.99%), Postives = 102/203 (50.25%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTK-GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            E   K V EYKFNDDG KVK+    R  K+    + K    RR+W KFGD++ +  G +  T +++EEI ++     GSK  E     ++    GK    +  CR C   G+HW+  CP+K  +  ++T ++              +K G YVPP M+ G   +G       R R+D ++VR++NLSE   E DL EL +  G
Sbjct:   28 EGDYKYVTEYKFNDDGKKVKV---VRTFKIEKQIVPKAVARRRSWVKFGDSLLDKPGPNSQTTMASEEIFMQ---FIGSK--EFDQTHETQLDPGKN---IAKCRIC--NGEHWSVNCPYKGTSMDSKTMMETKANAAAAAAVSDPSKMGKYVPPFMKDGGGGSGGKNWGRGRDRDDSSAVRISNLSESMTEADLEELVKKIG 217          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_PHANO (Eukaryotic translation initiation factor 3 subunit G OS=Phaeosphaeria nodorum GN=TIF35 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 69/214 (32.24%), Postives = 103/214 (48.13%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRK-LANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDL------AAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGM--RAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P Q +  +++G + +  Y+  +DG + K     R++K +    ++ R  ER+ WAKFG    +  G +   VS  E +L RP A      E K  GD   +  +     + CR C  +GDH+T++CPFKD        APA+   D P          G   G YVPP +  RAGA         R+D  ++RVTN+SE   E DL ++F  +G
Sbjct:   22 PSQTVVKNKDGSETITTYRVGEDGRRYKTTR--RIKKTVIKTTVNPRVAERKQWAKFGQEKGKPAGPQTDTVSVAENILFRPVAAWKASNEDK--GDEAKKKAELKNAKIKCRIC--QGDHFTTKCPFKDTMAPEGDVAPADMPDDAPGSASGGLGAGG---GGYVPPHLRGRAGAGEKMGGKFDRDDSATLRVTNVSEFAEEQDLRDMFSRYG 226          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_COCIM (Eukaryotic translation initiation factor 3 subunit G OS=Coccidioides immitis GN=TIF35 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 74/219 (33.79%), Postives = 102/219 (46.58%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRA--PGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKP--------XXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDEN---SVRVTNLSEDTREPDLLELFRPFG 814
            PP+QVI  +++G K VI Y+FNDDG KVK     R   +    ++ R  ER+ WAKFG       G  L   S  E ++ RP         E  KA G+      +     + CR C   G+H+T+RCPFKD  AP    +D+P                  G     YVPP +R G    G  M  R + +   ++RVTN+SE   E +L ++F  FG
Sbjct:   23 PPQQVIS-NKDGTKTVITYRFNDDGKKVKTTRRIRT-TVVKEHVNPRVAERKAWAKFGLEKDHAPGPSLDTTSVGENIIFRPSVNWKAQAKEVEKAGGEKGGLKDQLKDKKVKCRIC--SGEHFTARCPFKDTMAP----VDEPTGPTGGDNEDEERPAGALGSGATAYVPPALRKGGS-GGEKMAGRYERDELATLRVTNVSELAEEGELRDMFGRFG 232          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPNC (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif35 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 68/217 (31.34%), Postives = 102/217 (47.00%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPG--SKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKP-------XXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMR---RRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P Q I  +++G K ++ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP         E  K  G+  +   +     + CR C   G+H+T+RCPFKD  AP    +D+P                 G    +YVPP +R GA   G  M     ++D  ++RVTN+SE   E +L +LF  FG
Sbjct:   23 PPQQITTNKDGTKTIVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGNAPGPSFDTTSVGENIVFRPSVNWKLQAAEAEKNGGEKGSVKDQLKDKKVKCRIC--SGEHFTARCPFKDTMAP----VDEPTAGGEAGDEDSPAAGALGAGTSSYVPPHLRKGAAGGGERMAGKYEKDDLATLRVTNVSELAEEGELRDLFERFG 232          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROME (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila melanogaster GN=eIF3-S4-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 67/199 (33.67%), Postives = 99/199 (49.75%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFGD+  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++    MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGQKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPTKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-MMEKKASAAAAAAVDAPKSGKYVPPFLK-DSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROPS (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 67/199 (33.67%), Postives = 99/199 (49.75%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S  TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++ G  MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGESKSDKPGPNSHTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPTKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-LMEKKAAAAASAAVDAPKSGKYVPPFLK-DSQKGGLGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROPE (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila persimilis GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 67/199 (33.67%), Postives = 99/199 (49.75%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S  TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++ G  MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGESKSDKPGPNSHTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPTKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-LMEKKAAAAASAAVDAPKSGKYVPPFLK-DSQKGGLGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
The following BLAST results are available for this feature:
BLAST of FC877890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EIF3G_CRYNE7.571e-2033.33Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROWI7.571e-2032.69Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROWI7.571e-2033.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROER1.291e-1933.99Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_PHANO1.687e-1932.24Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_COCIM1.687e-1933.79Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPNC1.687e-1931.34Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROME1.687e-1933.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROPS2.203e-1933.67Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROPE2.203e-1933.67Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ5YO06RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877890 ID=FC877890; Name=FC877890; organism=Citrus clementina; type=EST; length=819bp
ATCTTTTTTAACTTTCACAAAAAATCGAAATCGCAAACCCTAAAACGCTT
TGTCTCGCATCCTCTCCAACGCTTGTGTTTTTCTTAATCTGATTCATTCG
AAAAAGATGTCGGTTTCGACTCAAAATCCGACCCAACCAAAGCTCCGTTG
GAGCGAACTGGACGAAGAAGACGGCGAGGATTTGGACTTCCTGCTGCCGC
CTAAACAAGTGATCGGCCCCGACGAGAACGGAGTCAAGAAAGTTATTGAA
TACAAGTTTAACGATGACGGCAATAAGGTCAAAATAACCACCACCACGCG
CGTGCGCAAGCTCGCTAACGCTCGTCTCAGCAAACGCGCGCTGGAGAGGA
GAAACTGGGCCAAGTTCGGCGACGCCGTTCGCGAAGACGTCGGTAGCAGA
CTTACCATGGTCTCCACCGAAGAGATCTTGCTGGAACGGCCTAGGGCTCC
TGGTAGCAAACCAGAAGAGACAAAGGCTGCAGGAGATTCCTTGGCGCAAC
TTGGGAAAGGTGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAG
GGTGATCACTGGACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGC
TGAGACATTCATTGATAAACCAGCTGCATCAGAGACTGCAGCTGCTGCTG
CTGGCGTGACCAAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGCG
GAGAGAACTGGAACCGATATGAGACGCAGGAATGATGAGAACTCTGTTAG
GGTCACCAACCTATCGGAGGACACTCGGGAACCTGACTTGCTTGAGCTCT
TCCGACCTTTTGGTGCTGT
back to top