FC877890

Overview
NameFC877890
Unique NameFC877890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877890_ssr641 microsatellite FC877890_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:26..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROGR (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila grimshawi GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 66/199 (33.17%), Postives = 100/199 (50.25%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K+    + K   +RR WAKFG++  +  G  S+ TMVS E+I+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++ G  +R R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKVV---RTYKITKQVVPKTVAKRRTWAKFGESKNDKPGPNSQTTMVS-EDIIMQFINS-----KEDEKANDPLLDPSKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-LMEKKAAAAASAAVDAPKSGKYVPPFLK-DSQKGGMGIRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROME (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila melanogaster GN=eIF3-S4-2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 68/199 (34.17%), Postives = 101/199 (50.75%), Query Frame = 2
Query:  236 KKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTK-GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            K V EYKFNDDG KVK+    R  K+    + K    RRNW KFGD+  +  G +  T +++EEI ++     GSK  +     ++    GK    +  CR C   G+HW+  CP+K  +  ++T ++              +K G YVPP M+ G   +G+      R R+D ++VR++NLSE   E DL EL +  G
Sbjct:   32 KYVTEYKFNDDGKKVKV---VRTFKIEKQIVPKAVARRRNWVKFGDSRSDKPGPNSQTTMASEEIFMQ---FIGSK--DFDQTHETQLDPGKN---IAKCRIC--NGEHWSVNCPYKGTSMDSKTVMETKANAAAAAAISDPSKTGKYVPPFMKDGGGISGSKNWGRGRDRDDSSAVRISNLSESMTETDLEELVKKIG 217          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_NEUCR (Eukaryotic translation initiation factor 3 subunit G OS=Neurospora crassa GN=tif-35 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 72/225 (32.00%), Postives = 109/225 (48.44%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARL-SKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAV--LMVCRTCGKKGDHWTSRCPFKDLAAP----------AETFIDKPXXXXXXXXXXGVTKGTYVPPGMR------AGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            PP+++   D  G   +IEY+ ND+G KVK     R+R + +  + + R  ER++W KFG +V++  G      S  E ++ +P     + E    + D  AQ  K       + CR C   G+H+T+RCP+KD  AP          A +  D+           G  KG+YVPP +R      A  ER G     R+D  ++RVTN+SE   E +L ++F  FG
Sbjct:   25 PPQKITNKD--GSTTIIEYRLNDNGQKVKTTR--RIRYITHREVVNPRVAERKSWTKFGLSVKDGAGPAPDTTSVGENIIFKPSF-NWRQEAKDESKDPNAQAMKDKLKDKKVKCRICN--GEHFTARCPYKDTMAPIGEAGAAADVAASAADEAAAASQGAAGAG-KKGSYVPPALRGAGGAAAAGERMGGKYGERDDLATLRVTNVSEMAEEQELRDMFERFG 241          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROYA (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila yakuba GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 69/203 (33.99%), Postives = 100/203 (49.26%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTK-GTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            E   K V EYKFNDDG KVK+    R  K+    + K    RR+W KFGD+  +  G +  T +++EEI ++     GSK  E     ++    GK    +  CR C   G+HW+  CP+K  +  ++T ++              +K G YVPP M+ G    G       R R+D ++VR++NLSE   E DL EL +  G
Sbjct:   28 EGDYKYVTEYKFNDDGKKVKV---VRTFKIEKQIVPKAVARRRSWVKFGDSRLDKPGPNSQTTMASEEIFMQ---FIGSK--EFDQTHETQLDPGKN---IAKCRIC--NGEHWSVNCPYKGTSMDSKTMMETKANAAAAAAISDPSKTGKYVPPFMKDGGGGPGGKNWGRGRERDDSSAVRISNLSESMTEADLEELVKKIG 217          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROYA (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila yakuba GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 66/199 (33.17%), Postives = 99/199 (49.75%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++    MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGESKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPTKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-LMEKKASAAAAAAVDAPKSGKYVPPFLK-DSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROER (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila erecta GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 66/199 (33.17%), Postives = 99/199 (49.75%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S+ TMVS EEI+++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++    MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGHKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGESKNDKPGPNSQTTMVS-EEIIMQFLNS-----KEDEKANDPLLDPTKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-LMEKKASAAAAAAVDAPKSGKYVPPFLK-DSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROVI (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila virilis GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 70/207 (33.82%), Postives = 101/207 (48.79%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P K+ +  D    K V EYKFND+G K+K+    ++ K     +S+   +RRNW KFGD+  +  G +  T    +EIL+      GSK  E   A D L      G  +  CR C   G+HW+ +CP+K  +   E+   K               G YVPP ++ GA+      R R+D ++VR++NLSE   E DL EL +  G
Sbjct:   22 PSKEYVDGD---YKHVTEYKFNDEGKKIKVVRSFKIEKKI---VSRAVAKRRNWVKFGDSKLDKPGPNSYTTKVADEILMNYM---GSKDFEH--AQDPL----DAGKPMAKCRICN--GEHWSVKCPYKGTSMDMES---KAIAAATAAVGETNKTGKYVPPFLKDGAKG-----RERDDSSAVRISNLSESMTEDDLEELVKKIG 203          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROSI (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila simulans GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 66/199 (33.17%), Postives = 98/199 (49.25%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S+ TMVS EEI ++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++    MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGQKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGESKNDKPGPNSQTTMVS-EEIFMQFLNS-----KEDEKANDPLLDPTKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-MMEKKASAAAAAAVDAPKSGKYVPPFLK-DSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G1_DROSE (Eukaryotic translation initiation factor 3 subunit G-1 OS=Drosophila sechellia GN=eIF3-S4-1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 66/199 (33.17%), Postives = 98/199 (49.25%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ENG K V EYK+N D  K K+    R  K++   + K   +RR W KFG++  +  G  S+ TMVS EEI ++   +     +E + A D L    K    +  CR C   G+HW+  CP+K  A      ++K               G YVPP ++  +++    MR R+D  ++R++NLSE   E DL EL +  G
Sbjct:   30 ENGQKYVTEYKYNKDDKKTKVV---RTYKISKQVVPKTVAKRRTWTKFGESKNDKPGPNSQTTMVS-EEIFMQFLNS-----KEDEKANDPLLDPTKN---IAKCRICN--GEHWSVNCPYKGTAMDTN-MMEKKASAAAAAAVDAPKSGKYVPPFLK-DSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIG 212          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROMO (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila mojavensis GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.181e-18
Identity = 68/208 (32.69%), Postives = 101/208 (48.56%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKP-EETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P K+ +  D    K V EYKFND+G K+K+    ++ K     +S+   +RRNW KFGD+  +  G +  T    +EIL+      GSK  E T+   D+   + K       CR C   G+HW+ +CP+K  +   E+   K               G YVPP ++ G +      R R+D ++VR++NLSE   E DL EL +  G
Sbjct:   22 PSKEHVDGD---YKHVTEYKFNDEGKKIKVVRSFKIEKKI---VSRAVAKRRNWTKFGDSKLDKPGPNSYTTKVADEILMNYM---GSKDFEHTQDPLDASKPIAK-------CRICN--GEHWSVKCPYKGTSMDIES---KAIAAATAAVGETNKAGKYVPPFLKEGGKG-----RERDDSSAVRISNLSESMTEDDLEELVKKIG 203          
The following BLAST results are available for this feature:
BLAST of FC877890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EI3G1_DROGR2.203e-1933.17Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROME2.877e-1934.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_NEUCR3.758e-1932.00Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROYA3.758e-1933.99Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROYA6.409e-1933.17Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROER6.409e-1933.17Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROVI8.371e-1933.82Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROSI8.371e-1933.17Eukaryotic translation initiation factor 3 subunit... [more]
EI3G1_DROSE8.371e-1933.17Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROMO3.181e-1832.69Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO06RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877890 ID=FC877890; Name=FC877890; organism=Citrus clementina; type=EST; length=819bp
ATCTTTTTTAACTTTCACAAAAAATCGAAATCGCAAACCCTAAAACGCTT
TGTCTCGCATCCTCTCCAACGCTTGTGTTTTTCTTAATCTGATTCATTCG
AAAAAGATGTCGGTTTCGACTCAAAATCCGACCCAACCAAAGCTCCGTTG
GAGCGAACTGGACGAAGAAGACGGCGAGGATTTGGACTTCCTGCTGCCGC
CTAAACAAGTGATCGGCCCCGACGAGAACGGAGTCAAGAAAGTTATTGAA
TACAAGTTTAACGATGACGGCAATAAGGTCAAAATAACCACCACCACGCG
CGTGCGCAAGCTCGCTAACGCTCGTCTCAGCAAACGCGCGCTGGAGAGGA
GAAACTGGGCCAAGTTCGGCGACGCCGTTCGCGAAGACGTCGGTAGCAGA
CTTACCATGGTCTCCACCGAAGAGATCTTGCTGGAACGGCCTAGGGCTCC
TGGTAGCAAACCAGAAGAGACAAAGGCTGCAGGAGATTCCTTGGCGCAAC
TTGGGAAAGGTGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAG
GGTGATCACTGGACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGC
TGAGACATTCATTGATAAACCAGCTGCATCAGAGACTGCAGCTGCTGCTG
CTGGCGTGACCAAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGCG
GAGAGAACTGGAACCGATATGAGACGCAGGAATGATGAGAACTCTGTTAG
GGTCACCAACCTATCGGAGGACACTCGGGAACCTGACTTGCTTGAGCTCT
TCCGACCTTTTGGTGCTGT
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