FC877890

Overview
NameFC877890
Unique NameFC877890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877890_ssr641 microsatellite FC877890_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:26..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_MAGGR (Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe grisea GN=TIF35 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 66/228 (28.95%), Postives = 105/228 (46.05%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRV---RKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAA-GDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGV------------TKGTYVPPGMRAGAER-------TGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P+ ++  D  G K +I ++FND G KVK     R+   R++ N R++    ER+ W KFG + ++  G      S  E ++ RP A   K ++ ++   ++ A   K     + CR C   G+H+T+RCP+KD  AP                  G+             KG+YVPP +R   +         G     R+D  ++RVTN+SE   E +L ++F  FG
Sbjct:   28 PQTIVNKD--GTKTIISWRFNDQGQKVKTTRRVRLTTHREVVNPRVA----ERKKWEKFGLSAKDGPGPASDTTSVGENIIFRPSANWRKDQKDESKDANANAMKDKLKDKKVKCRICN--GEHFTARCPYKDTMAPIGEAAPAGGVGGGGDDEGGILSAPGAAGGAGAKKGSYVPPALRGDRKEGEKMGGGAGGKYGERDDLATLRVTNVSEMAEEQELRDMFERFG 247          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROGR (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila grimshawi GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 69/208 (33.17%), Postives = 102/208 (49.04%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTK-GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            P K++I  D    K + +YKFND+G K+K+    +V +     +S+   +RR W KFGD+ ++  G +  T    ++IL+      GSK  E   A D L     G   +  CR C   GDHW+ +CP+K  +   E+   K              K G YVPP ++ GA+      R R+D  +VR++NLSE   E DL EL +  G
Sbjct:   22 PSKEIIDGD---YKHITQYKFNDEGKKIKVVRSFKVERKI---VSRAVAKRRTWTKFGDSRQDMPGPNSYTTKVADDILMNYI---GSKDFEH--AHDHL----DGNKPMAKCRICN--GDHWSVKCPYKGTSMDIES---KAIAAATAAAVGDTNKSGKYVPPFLKDGAKG-----RERDDSCAVRISNLSESMTEDDLEELVKKIG 204          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROPS (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 63/203 (31.03%), Postives = 99/203 (48.77%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTK-GTYVPPGMRAGAERTGTDMRRR---NDENSVRVTNLSEDTREPDLLELFRPFG 814
            +  +K V EYK+N+DG KVK+    R  K+    + K    RRNW+KFGD+  +  G  S+ TMV+ E  ++       SK  E   A +   + GK    +  CR C   G+HW+  CP+K  +  ++T ++              +K G YV P ++ G    G  +  +    + ++VR++NLSE   E DL EL +  G
Sbjct:   28 QGNLKFVAEYKYNEDGKKVKV---VRTYKIQKQTVPKVVARRRNWSKFGDSRLDKPGPCSQTTMVAEEVHMV----FISSKELEQAQAQEPQMEPGKN---IARCRIC--NGEHWSVNCPYKGTSMDSKTLMESKATAAAAAAVSDASKTGKYVSPFLKEGGCAIGGGIGAKPWVRERSAVRISNLSESMTEADLEELVKKIG 218          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EI3G2_DROPE (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila persimilis GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 63/205 (30.73%), Postives = 99/205 (48.29%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTK-GTYVPPGMRAGAERTGTDMRRR-----NDENSVRVTNLSEDTREPDLLELFRPFG 814
            +  +K V EYK+N+DG KVK+    R  K+    + K    RRNW+KFGD++ +  G  S+ TMV+ E  ++       SK  E   A +   + GK    +  CR C   G+HW+  CP+K  +  ++T ++              +K G YV P ++ G    G  +         + ++VR++NLSE   E DL EL +  G
Sbjct:   28 QGNLKFVAEYKYNEDGKKVKV---VRTYKIQKQTVPKVVARRRNWSKFGDSLLDKPGPCSQTTMVAEEVHMV----FISSKELEQAQAQEPQVEPGKN---IARCRIC--NGEHWSVNCPYKGTSMDSKTLMESKATAAAAAAVSDASKTGKYVSPFLKEGGCAIGGGIGIGAKPWVRERSAVRISNLSESMTEADLEELVKKIG 220          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_ASHGO (Eukaryotic translation initiation factor 3 subunit G OS=Ashbya gossypii GN=TIF35 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 65/215 (30.23%), Postives = 99/215 (46.05%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDL------AAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDM----RRRNDENSVRVTNLSEDTREPDLLE-LFRPF 811
            P+ +  PD  G K +I +K  D G K+KI    +  K+   +++K   ERR WAK+G       G  L+     E L  R  AP  K    + + +   +  +G   L VCRTCG  G H+T++CPF+D+       A  E  +D                G YVPP  RAG     +D+    R R+D  ++++  L+E+  E  + + L  PF
Sbjct:    7 PRIIENPD--GSKTIISFKI-DGGKKLKITQRVKEIKITE-KVNKSIAERRKWAKYGAEAGSGPGPNLSTTKLAEELQLR-LAPSLKEVREQDSKEKEKEKQEGEKSLYVCRTCGIPG-HFTTKCPFRDILGEMSGPAEGEGGLD---AAVDTAMPAASAPGKYVPPSRRAGGRDPSSDVYKDQRERDDAMTLKIMQLNENADEMTIKQKLLSPF 212          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_BOMMO (Eukaryotic translation initiation factor 3 subunit G OS=Bombyx mori GN=eIF3-S4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 59/209 (28.23%), Postives = 93/209 (44.50%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLE--RPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            PP +V+   ENG+K V EYK+++D  KVKI    R  K+    +SK   +R+ W+KFGD+  +  G +  T    E++ ++    +    +P++    G+          V+  CRTC  +GDH T  CPFK      +    K                 Y+PP               R D  ++R++NLS    E D+ +L + FG
Sbjct:   24 PPSEVV---ENGLKIVTEYKYDNDNKKVKI---VRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDD----GELDGLKPPSSNVIFKCRTC--QGDHLTLYCPFKH----TQIAQAKTAEAAKAAEAKVAASNKYIPPSSAGRIPGRDQPPVSREDVTAIRISNLSNFAVEADIDDLVKGFG 216          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_CANAL (Eukaryotic translation initiation factor 3 subunit G OS=Candida albicans GN=TIF35 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 64/211 (30.33%), Postives = 93/211 (44.08%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMV-CRTCGKKGDHWTSRCPFKDL--AAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLL--ELFRPFG 814
            PP+ +  PD  G K VI ++ N DG KVKI    +  K+   ++     +R+NW K+G       G   +     E  ++       K +E K   D   +  +  AV  + CR CG  GDH+T++CPFKD   AA   T                   G YVP  +RA A         R+D  +++V+ L+    E D+L  ELF  FG
Sbjct:   19 PPEVIANPD--GTKTVITFRTNQDGKKVKITQKIKEVKVQE-KVHPLIAQRKNWKKYGKEKNSPPGPDTSTTQLGE-KVDLKLGTSWKQDEKKEEEDKAHERAQKIAVQTIKCRVCG--GDHYTAKCPFKDTLGAAAGVTPSGTTPEPTSEGGAGAAGAGKYVPRHLRADANGNVPTREARDDSTTLKVSQLNSFVDE-DMLRNELFAKFG 222          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_KLULA (Eukaryotic translation initiation factor 3 subunit G OS=Kluyveromyces lactis GN=TIF35 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 65/214 (30.37%), Postives = 98/214 (45.79%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLA-NARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETF---IDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGT----DMRRRNDENSVRVTNLSEDTREPDL-LELFRPFG 814
            P+  I  +++G K VI +K  D G K K+    +V+++    +++K    RRNW K+G       G  ++     E L E   +P  K  E + A +  A   +    ++ CR CG  G H+T  CP+KD      T    +D            G   G YVPP +RAGA    +    D R R+D  ++R+T ++E   E  L  EL  PFG
Sbjct:    5 PEPRIIENDDGSKTVISFKIQD-GKKYKVTQ--KVKEITVTEKVNKNIALRRNWKKYGADKGAAPGPDISTTQLGEEL-ELDLSPNWKEMEEEKAKEKAANSTQK---VITCRICG--GAHFTMHCPYKDTLGKKPTTSAGLDPAIGGGDMSAQGGSGSGRYVPPSLRAGARDPSSNAYQDQRERDDAKTIRLTQVNELADEEVLKRELLFPFG 209          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_DEBHA (Eukaryotic translation initiation factor 3 subunit G OS=Debaryomyces hansenii GN=TIF35 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13
Identity = 61/213 (28.64%), Postives = 97/213 (45.54%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGV-TKGTYVPPGMR--AGAERTGTDMRRRNDENSVRVTNLS----EDTREPDLLELFRPF 811
            P   I  + +G K V+ Y+ N +G KVKI    +  K+   ++     +R+NWAK+G       G  +R T +  +  L         + +E ++  +  AQL     +   CRTCG  GDH+TS+CPFKD      T  D            G+   G YVP  +R  A       D++ R+D  +++++ L+    ED    +LL  + PF
Sbjct:   17 PTPEITTNPDGTKTVVSYRLNANGQKVKITQKIKEVKVKE-KVHPLIAQRKNWAKYGKEKNTPPGPDTRTTQLGEKVELKLGTSWKEIEKQEEESKEEQKAQLVSTQRIK--CRTCG--GDHFTSKCPFKDTLISDST--DASNAATPEPADDGMNAPGKYVPRHLRKDANGNMPAKDLKDRDDSTTLKISQLNSIVDEDMLRNELLGRYGPF 222          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_BRUMA (Eukaryotic translation initiation factor 3 subunit G OS=Brugia malayi GN=Bm1_08615 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13
Identity = 62/202 (30.69%), Postives = 90/202 (44.55%), Query Frame = 2
Query:  224 ENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL-TMVSTEEILLE--RPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAP--AETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFG 814
            ++G+K V +   +DD  K K+    +V      ++S+   ER+ W KFG    +  G  + T    EE+L++  R RA G +  +    G  +A    G      CR C K  +HW+  CP+K + A    E    K           G   G YV PGMR           RR++EN+ RVTNL E+  E +L  LF   G
Sbjct:   41 KDGIKIVTDI-ISDDTGKYKVVTTFKV---VTKKVSRPIAERKKWKKFGQCKNDGPGPHVSTTYVAEEVLMQFIRNRA-GEQQLDIGDEGTKVATTTGGS--FTHCRYC-KSDEHWSVSCPYKSMYAKDDEEDLESKEKDTKLGPTVPG--SGKYVAPGMRGDRPAVTGGAERRSEENTCRVTNLPEECDEMELRALFGTVG 232          
The following BLAST results are available for this feature:
BLAST of FC877890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EIF3G_MAGGR1.209e-1728.95Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROGR2.062e-1733.17Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROPS4.593e-1731.03Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROPE1.023e-1630.73Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASHGO1.634e-1430.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_BOMMO3.639e-1428.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CANAL8.108e-1430.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_KLULA2.359e-1330.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_DEBHA8.964e-1328.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_BRUMA8.964e-1330.69Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO06RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877890 ID=FC877890; Name=FC877890; organism=Citrus clementina; type=EST; length=819bp
ATCTTTTTTAACTTTCACAAAAAATCGAAATCGCAAACCCTAAAACGCTT
TGTCTCGCATCCTCTCCAACGCTTGTGTTTTTCTTAATCTGATTCATTCG
AAAAAGATGTCGGTTTCGACTCAAAATCCGACCCAACCAAAGCTCCGTTG
GAGCGAACTGGACGAAGAAGACGGCGAGGATTTGGACTTCCTGCTGCCGC
CTAAACAAGTGATCGGCCCCGACGAGAACGGAGTCAAGAAAGTTATTGAA
TACAAGTTTAACGATGACGGCAATAAGGTCAAAATAACCACCACCACGCG
CGTGCGCAAGCTCGCTAACGCTCGTCTCAGCAAACGCGCGCTGGAGAGGA
GAAACTGGGCCAAGTTCGGCGACGCCGTTCGCGAAGACGTCGGTAGCAGA
CTTACCATGGTCTCCACCGAAGAGATCTTGCTGGAACGGCCTAGGGCTCC
TGGTAGCAAACCAGAAGAGACAAAGGCTGCAGGAGATTCCTTGGCGCAAC
TTGGGAAAGGTGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAG
GGTGATCACTGGACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGC
TGAGACATTCATTGATAAACCAGCTGCATCAGAGACTGCAGCTGCTGCTG
CTGGCGTGACCAAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGCG
GAGAGAACTGGAACCGATATGAGACGCAGGAATGATGAGAACTCTGTTAG
GGTCACCAACCTATCGGAGGACACTCGGGAACCTGACTTGCTTGAGCTCT
TCCGACCTTTTGGTGCTGT
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