FC877890

Overview
NameFC877890
Unique NameFC877890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877890_ssr641 microsatellite FC877890_ssr641:641..652. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:26..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_PICST (Eukaryotic translation initiation factor 3 subunit G OS=Pichia stipitis GN=TIF35 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.171e-12
Identity = 64/206 (31.07%), Postives = 91/206 (44.17%), Query Frame = 2
Query:  212 IGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG---SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLL--ELFRPFG 814
            I  + +G K VI Y+ N DG KVKI    +  K+   R+     +R+NW K+G   +   G   S   +    E+ L        K EE + A +   +L       + CRTCG  GDH+TS+CPFKD      +    P              G YVP  +RA A         R+D  +++V+ L+    E D+L  ELF  FG
Sbjct:   21 ITTNPDGTKTVITYRTNQDGKKVKITQKIKEVKVQE-RVHPLIAQRKNWKKYGKESKSPPGPDTSTTQLGEKVELKLGTSWKQQEKEEEEEKAENRAQKLS---VQTIRCRTCG--GDHYTSKCPFKDTLGATTS---SPAAESGAGDNG---PGKYVPRHLRADANGNLPSKEGRDDSTTLKVSQLNSFVDE-DMLRNELFARFG 213          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_CANGA (Eukaryotic translation initiation factor 3 subunit G OS=Candida glabrata GN=TIF35 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12
Identity = 67/224 (29.91%), Postives = 97/224 (43.30%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG---SRLTMVSTEEILLERP--RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDK---------PXXXXXXXXXXGVTK-GTYVPPGMRAGAERTGT----DMRRRNDENSVRVTNLSEDTREPDLL-ELFRPF 811
            P+ +  PD  G K +I YK  ++G K KI    R  K+   R+ +   ERR+WAKFG       G   S      T E+LL+R   +   ++ ++ KA+              + CR CG    H+T  CPFK + +      D          P          G+T  G YVPP  RAGA    +    D R R+D  ++++  L+E+  E  L  EL  PF
Sbjct:    6 PEIIENPD--GTKSIITYK-TENGEKYKIIQKVRDVKITE-RVHRSVAERRSWAKFGAEKNSPPGPNNSTTQFGETVELLLDRNWRKIIEARTQKLKASASKT----------ITCRLCGNA--HYTMNCPFKTILSEISALEDPAAAAAGPGLPEEVPAGKADSGITATGAYVPPSRRAGARDPSSDAYRDARERDDSCTLKILQLNENADENTLRNELLFPF 213          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_VANPO (Eukaryotic translation initiation factor 3 subunit G OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF35 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.766e-11
Identity = 65/216 (30.09%), Postives = 98/216 (45.37%), Query Frame = 2
Query:  227 NGVKKVIEYKFNDDGNKVKIXXXXRVRKL-ANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLA----------APAET---FIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGT----DMRRRNDENSVRVTNLSEDTREPDLL-ELFRPFG 814
            +G K +I Y+  ++G K KI    +VR++  + ++ K    R+ WAK+G+      G +  T    EE+ L   R    K EE        A++   G  ++ CR CG    H+T  CPFK +           AP E     ++ P           V  G YVPP  RAGA+   +    D R R+D  ++++T L+E+  E  L  EL  PFG
Sbjct:   14 DGTKTIITYRV-ENGQKFKITQ--KVREVHVSEKVHKAVASRKQWAKYGEERNAPPGPNHSTTQLGEEVYLRLSRNWKQKEEEETEK----AKIKSDG--IISCRLCGNA--HYTMNCPFKSIMSDIAALEDPNAPIEVGSNAVEAPVETASSAA--AVASGKYVPPSRRAGAKDPSSDAYRDSRERDDMATLKITQLNENADETTLREELLFPFG 216          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_LODEL (Eukaryotic translation initiation factor 3 subunit G OS=Lodderomyces elongisporus GN=TIF35 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.766e-11
Identity = 59/211 (27.96%), Postives = 89/211 (42.18%), Query Frame = 2
Query:  197 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMV-CRTCGKKGDHWTSRCPFKDL--AAPAETFIDKPXXXXXXXXXXGVTKGTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLL--ELFRPFG 814
            P   +  PD  G K VI ++ N DG KVKI    +   +   ++     +R+NWAK+G       G   +     E  ++       K  E K   D   +      V  + CR CG  GDH+T++CPFKD   A+       +P            + G Y+P  +R  A         R+D  +++V+ L+    E D+L  ELF  FG
Sbjct:   18 PADIIQNPD--GTKTVITFRTNQDGKKVKITQKIK-EVIVREKVHPLIAQRKNWAKYGKEKHSSPGPDTSTTQLGE-KVDLKLGLSWKQVEKKEEEDKAQERASRVVVQTIKCRVCG--GDHYTAKCPFKDTLGASTLNGGTPEPGSEGAGDADAVTSTGRYIPRHLRPDANGNIPTREARDDSTTLKVSQLNTFVDE-DMLRNELFARFG 221          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_YEAST (Eukaryotic translation initiation factor 3 subunit G OS=Saccharomyces cerevisiae GN=TIF35 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.919e-11
Identity = 65/220 (29.55%), Postives = 94/220 (42.73%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXX----------GVTKGTYVPPGMRAGAERTGT----DMRRRNDENSVRVTNLSEDTREPDLL-ELFRPF 811
            P+++I  + +G + +I YK  +DG K KI    +  K+   ++ K   ER+NW K+G       G S +T    EE+ L   R    K  E +      A L K G   + CR CG   DH T  CPFK + +      D                      G   G YVPP  RAGA    +    D R R+D  ++++  ++E+  E  L  EL  PF
Sbjct:    6 PEEII-ENADGSRSIITYKI-EDGVKYKITQKVKEVKVLE-KVHKSVAERKNWHKYGSEKGSPAGPSAVTARLGEEVELRLSR--NWKQAEEERIQKEKASLTKTG---LQCRLCGN--DHMTMNCPFKTILSELSALEDPATNEGGVEAASEEKAGQVGGAGSIPGQYVPPSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLREELLFPF 215          
BLAST of FC877890 vs. ExPASy Swiss-Prot
Match: EIF3G_YEAS7 (Eukaryotic translation initiation factor 3 subunit G OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF35 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.919e-11
Identity = 65/220 (29.55%), Postives = 94/220 (42.73%), Query Frame = 2
Query:  200 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAETFIDKPXXXXXXXXXX----------GVTKGTYVPPGMRAGAERTGT----DMRRRNDENSVRVTNLSEDTREPDLL-ELFRPF 811
            P+++I  + +G + +I YK  +DG K KI    +  K+   ++ K   ER+NW K+G       G S +T    EE+ L   R    K  E +      A L K G   + CR CG   DH T  CPFK + +      D                      G   G YVPP  RAGA    +    D R R+D  ++++  ++E+  E  L  EL  PF
Sbjct:    6 PEEII-ENADGSRSIITYKI-EDGVKYKITQKVKEVKVLE-KVHKSVAERKNWHKYGSEKGSPAGPSAVTARLGEEVELRLSR--NWKQAEEERIQKEKASLTKTG---LQCRLCGN--DHMTMNCPFKTILSELSALEDPATSEGGVEAASEEKAGQVGGAGSIPGQYVPPSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLREELLFPF 215          
The following BLAST results are available for this feature:
BLAST of FC877890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EIF3G_PICST1.171e-1231.07Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CANGA1.529e-1229.91Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_VANPO3.766e-1130.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_LODEL3.766e-1127.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_YEAST4.919e-1129.55Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_YEAS74.919e-1129.55Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO06RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877890 ID=FC877890; Name=FC877890; organism=Citrus clementina; type=EST; length=819bp
ATCTTTTTTAACTTTCACAAAAAATCGAAATCGCAAACCCTAAAACGCTT
TGTCTCGCATCCTCTCCAACGCTTGTGTTTTTCTTAATCTGATTCATTCG
AAAAAGATGTCGGTTTCGACTCAAAATCCGACCCAACCAAAGCTCCGTTG
GAGCGAACTGGACGAAGAAGACGGCGAGGATTTGGACTTCCTGCTGCCGC
CTAAACAAGTGATCGGCCCCGACGAGAACGGAGTCAAGAAAGTTATTGAA
TACAAGTTTAACGATGACGGCAATAAGGTCAAAATAACCACCACCACGCG
CGTGCGCAAGCTCGCTAACGCTCGTCTCAGCAAACGCGCGCTGGAGAGGA
GAAACTGGGCCAAGTTCGGCGACGCCGTTCGCGAAGACGTCGGTAGCAGA
CTTACCATGGTCTCCACCGAAGAGATCTTGCTGGAACGGCCTAGGGCTCC
TGGTAGCAAACCAGAAGAGACAAAGGCTGCAGGAGATTCCTTGGCGCAAC
TTGGGAAAGGTGGTGCTGTTCTCATGGTGTGTAGGACTTGTGGTAAGAAG
GGTGATCACTGGACGTCAAGGTGCCCTTTCAAGGATCTTGCTGCTCCAGC
TGAGACATTCATTGATAAACCAGCTGCATCAGAGACTGCAGCTGCTGCTG
CTGGCGTGACCAAGGGAACATATGTTCCTCCTGGCATGAGAGCAGGGGCG
GAGAGAACTGGAACCGATATGAGACGCAGGAATGATGAGAACTCTGTTAG
GGTCACCAACCTATCGGAGGACACTCGGGAACCTGACTTGCTTGAGCTCT
TCCGACCTTTTGGTGCTGT
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