FC877895

Overview
NameFC877895
Unique NameFC877895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length884
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11587 contig Ccv1_Contig11587:17..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877895 vs. ExPASy Swiss-Prot
Match: GUN13_ORYSJ (Endoglucanase 13 OS=Oryza sativa subsp. japonica GN=GLU6 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.735e-32
Identity = 63/139 (45.32%), Postives = 91/139 (65.47%), Query Frame = 3
Query:  468 YAEALKVAMQFFDVQKSGKLVNNK-ISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVQVGHPDKDHKCWERPESMAEGRPLTQVN 881
            YA A    + FF+ Q+SGKL +++ + WRGDSAL DG   G+DL  G YD+GDH+KFG PMA+  T+LSW ++E+  +M   ++L    D+++W T+Y + AH + N L VQVG  D DH CWER E M+  R   +++
Sbjct:   39 YAGAFDKCLLFFEAQRSGKLPDDRLVRWRGDSALTDGFSQGVDLVGGYYDSGDHVKFGLPMAYAVTMLSWGVVEFEKEMVDGNKLHRVLDAIRWGTNYFVKAHTQHNALWVQVGDGDSDHLCWERAEDMSTPRTAFKID 177          
BLAST of FC877895 vs. ExPASy Swiss-Prot
Match: GUN13_ORYSI (Endoglucanase 13 OS=Oryza sativa subsp. indica GN=GLU6 PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.735e-32
Identity = 63/139 (45.32%), Postives = 91/139 (65.47%), Query Frame = 3
Query:  468 YAEALKVAMQFFDVQKSGKLVNNK-ISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVQVGHPDKDHKCWERPESMAEGRPLTQVN 881
            YA A    + FF+ Q+SGKL +++ + WRGDSAL DG   G+DL  G YD+GDH+KFG PMA+  T+LSW ++E+  +M   ++L    D+++W T+Y + AH + N L VQVG  D DH CWER E M+  R   +++
Sbjct:   39 YAGAFDKCLLFFEAQRSGKLPDDRLVRWRGDSALTDGFSQGVDLVGGYYDSGDHVKFGLPMAYAVTMLSWGVVEFEKEMVDGNKLHRVLDAIRWGTNYFVKAHTQHNALWVQVGDGDSDHLCWERAEDMSTPRTAFKID 177          
BLAST of FC877895 vs. ExPASy Swiss-Prot
Match: GUN8_ARATH (Endoglucanase 8 OS=Arabidopsis thaliana GN=CEL1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.660e-31
Identity = 67/139 (48.20%), Postives = 96/139 (69.06%), Query Frame = 3
Query:  468 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVQVGHPDKDHKCWERPESMAEGRPLTQVN 881
            Y +AL+ ++ FF+ Q+SGKL  + ++ WR DSAL+DG   G+DL+ G YDAGD++KFGFPMAFT T+LSW+I+++G  M    +L+ A  ++KW TDYL+ A     V+ VQVG    DH CWERPE M   R + +++
Sbjct:   29 YRDALRKSILFFEGQRSGKLPPDQRLKWRRDSALRDGSSAGVDLSGGYYDAGDNIKFGFPMAFTTTMLSWSIIDFGKTMG--PELRNAVKAVKWGTDYLLKATAIPGVVFVQVGDAYSDHNCWERPEDMDTLRTVYKID 165          
BLAST of FC877895 vs. ExPASy Swiss-Prot
Match: GUN18_ARATH (Endoglucanase 18 OS=Arabidopsis thaliana GN=At4g09740 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.660e-31
Identity = 63/140 (45.00%), Postives = 93/140 (66.43%), Query Frame = 3
Query:  468 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVQVGHPDKDHKCWERPESMAEGRPLTQVNT 884
            Y +AL  ++ FF+ Q+SGKL  N ++ WR DS L DG    ++L  G YDAGD++KF +PM+FT T+LSWA LEY +++  V+QL   + ++KW T++++ AH   N+L  QVG  + DH CWERPE M   R L  +++
Sbjct:   24 YGDALNKSILFFEGQRSGKLPTNQRVKWRADSGLSDGASANVNLIGGYYDAGDNVKFVWPMSFTTTLLSWAALEYQNEITFVNQLGYLRSTIKWGTNFILRAHTSTNMLYTQVGDGNSDHSCWERPEDMDTPRTLYSISS 163          
BLAST of FC877895 vs. ExPASy Swiss-Prot
Match: GUNF_CLOTH (Endoglucanase F OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=celF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.699e-31
Identity = 69/139 (49.64%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  468 YAEALKVAMQFFDVQKSGKLVNNKIS-WRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVQVGHPDKDHKCWERPESMAEGRPLTQVN 881
            Y EAL+ A+ F++ Q+SGKL  NK + WRGDSAL DG D GLDLT G YDAGDH+KF  PMA+  T+L+W++ E  D      QL    D++KW TDY I  HP  NV   QVG    DH  W   E M   RP  +V+
Sbjct:   32 YGEALQKAIMFYEFQRSGKLPENKRNNWRGDSALNDGADNGLDLTGGWYDAGDHVKFNLPMAYAVTMLAWSVYESRDAYVQSGQLPYILDNIKWATDYFIKCHPSPNVYYYQVGDGALDHSWWGPAEVMQMPRPSFKVD 170          
BLAST of FC877895 vs. ExPASy Swiss-Prot
Match: GUNA_CALSA (Endoglucanase A OS=Caldocellum saccharolyticum GN=celA PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.699e-31
Identity = 67/138 (48.55%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  468 YAEALKVAMQFFDVQKSGKLVN-NKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVQVGHPDKDHKCWERPESMAEGRPLTQV 878
            Y EAL+ A+ F++ Q SGKL N  + +WRGDSALKDG+D GLDLT G +DAGDH+KF  PM++T T+LSWA  EY D      QL+   + ++W+ DY +  HP + V   QVG   KDH  W   E M   RP  +V
Sbjct:   28 YGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVKFNLPMSYTGTMLSWAAYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYVYYYQVGDGGKDHAWWGPAEVMQMERPSFKV 165          
BLAST of FC877895 vs. ExPASy Swiss-Prot
Match: GUN8_ORYSJ (Endoglucanase 8 OS=Oryza sativa subsp. japonica GN=Os02g0778600 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.699e-31
Identity = 61/139 (43.88%), Postives = 92/139 (66.19%), Query Frame = 3
Query:  468 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVQVGHPDKDHKCWERPESMAEGRPLTQVN 881
            Y +AL  ++ F + Q+SGKL   N+I WRGDS ++DG+   +DLT G YDAGD++K+G P+AFT T L+W  + +  ++    +L+    +++W TDY + A  K++ L VQVG P+ DH+CW RPE+M   R L Q+N
Sbjct:   43 YKDALTKSIMFLEAQRSGKLPPTNRIKWRGDSGMEDGKLANVDLTGGYYDAGDNVKYGLPLAFTVTTLAWTAMAFEKELKAARELENVHAAIRWGTDYFLKAATKKDHLWVQVGDPNADHQCWVRPENMPTPRTLYQIN 181          
BLAST of FC877895 vs. ExPASy Swiss-Prot
Match: GUNB_CELFI (Endoglucanase B OS=Cellulomonas fimi GN=cenB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.831e-31
Identity = 66/139 (47.48%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  468 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVQVGHPDKDHKCWERPESMAEGRPLTQVN 881
            YAEAL+ +M F+  Q+SG L  +  +SWRGDS L DG D+G DLT G YDAGDH+KFGFPMAF+AT+L+W  +E          L   +D+L++++DY + AH   N L VQVG  + DHK W   E M   RP  +++
Sbjct:   39 YAEALQKSMFFYQAQRSGDLPADFPVSWRGDSGLTDGADVGKDLTGGWYDAGDHVKFGFPMAFSATMLAWGAIESPTGYSKAGSLDELKDNLRFVSDYFVKAHTAPNELYVQVGDGEADHKWWGPAEVMTMARPSHKIS 177          
BLAST of FC877895 vs. ExPASy Swiss-Prot
Match: GUN4_BACS5 (Endoglucanase 4 OS=Bacillus sp. (strain KSM-522) PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.831e-31
Identity = 62/139 (44.60%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  468 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVQVGHPDKDHKCWERPESMAEGRPLTQVN 881
            Y E L+ ++ F++ Q+SGKL  +N+++WRGDS L+DG+D+G DLT G YDAGDH+KFG PMA++A VL+W + EY +  +  + L    D +KW TDY + AH   N    QVG  + DH  W   E M   RP  +++
Sbjct:   30 YVEVLQKSILFYEAQRSGKLPESNRLNWRGDSGLEDGKDVGHDLTGGWYDAGDHVKFGLPMAYSAAVLAWTVYEYREAYEEAELLDDMLDQIKWATDYFLKAHTGPNEFWAQVGDGNADHGWWGPAEVMPMNRPAFKID 168          
BLAST of FC877895 vs. ExPASy Swiss-Prot
Match: GUN17_ORYSJ (Endoglucanase 17 OS=Oryza sativa subsp. japonica GN=GLU13 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.831e-31
Identity = 64/139 (46.04%), Postives = 94/139 (67.63%), Query Frame = 3
Query:  468 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDVVDQLQPAQDSLKWITDYLISAHPKENVLIVQVGHPDKDHKCWERPESMAEGRPLTQVN 881
            Y++AL  ++ FF+ Q+SG+L  + ++ WR DSAL DG   G+DLT G YDAGD++KFGFPMAFTAT++SW ++++G           A+++++W TDYL+ A    N + VQVG   +DH CWERPE M   R + +V+
Sbjct:   25 YSDALHKSILFFEGQRSGRLPPDQRLRWRRDSALNDGATAGVDLTGGYYDAGDNVKFGFPMAFTATLMSWGLIDFGRSFGA--HAAEAREAVRWATDYLMKATATPNTVYVQVGDAFRDHSCWERPEDMDTPRTVYKVD 161          
The following BLAST results are available for this feature:
BLAST of FC877895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GUN13_ORYSJ9.735e-3245.32Endoglucanase 13 OS=Oryza sativa subsp. japonica G... [more]
GUN13_ORYSI9.735e-3245.32Endoglucanase 13 OS=Oryza sativa subsp. indica GN=... [more]
GUN8_ARATH1.660e-3148.20Endoglucanase 8 OS=Arabidopsis thaliana GN=CEL1 PE... [more]
GUN18_ARATH1.660e-3145.00Endoglucanase 18 OS=Arabidopsis thaliana GN=At4g09... [more]
GUNF_CLOTH3.699e-3149.64Endoglucanase F OS=Clostridium thermocellum (strai... [more]
GUNA_CALSA3.699e-3148.55Endoglucanase A OS=Caldocellum saccharolyticum GN=... [more]
GUN8_ORYSJ3.699e-3143.88Endoglucanase 8 OS=Oryza sativa subsp. japonica GN... [more]
GUNB_CELFI4.831e-3147.48Endoglucanase B OS=Cellulomonas fimi GN=cenB PE=3 ... [more]
GUN4_BACS54.831e-3144.60Endoglucanase 4 OS=Bacillus sp. (strain KSM-522) P... [more]
GUN17_ORYSJ4.831e-3146.04Endoglucanase 17 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877895 ID=FC877895; Name=FC877895; organism=Citrus clementina; type=EST; length=884bp
AAAATAAAATAACGAATAAACCCGCGTGACTGACCTCTGTCGGTGATCAA
AGAAATTAAAGAAAATTGACGATCTGATTTGTCCCAGACCCAGCTGCTTC
AATTGTATTGTATTAGAGAATTTGCAAAACTGATTCAGCAGCCAAATTAA
GCTTCTTACCACTCACATTTCACCCACTAGAGAGAAATACGGTGCTGCGT
TTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTACTCTCTTCACCCA
ATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTTGACGGCATTGTG
TTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTCGGATGGTTCTTG
GTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGTTTACACTATTAA
AAAGAAAACAAGTCACTCTGATAAGCCGGCTCCAGTTCCCGGTCCCCCCG
GCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTCGCAATGCAGTTC
TTCGACGTACAAAAATCGGGAAAGTTGGTGAATAATAAGATATCATGGAG
AGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTTTGGATCTCACAA
AAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGGTTTCCGATGGCT
TTTACTGCGACTGTGTTGTCGTGGGCCATCCTTGAGTATGGAGATCAGAT
GGACGTTGTGGATCAGTTGCAACCAGCTCAGGATTCTCTCAAGTGGATCA
CTGATTATCTTATCAGTGCTCATCCCAAAGAGAATGTCCTTATTGTTCAG
GTGGGGCATCCTGATAAGGACCACAAATGTTGGGAAAGACCTGAAAGCAT
GGCTGAAGGGAGACCACTCACTCAGGTCAACACA
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