FC877896

Overview
NameFC877896
Unique NameFC877896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10472 contig Ccv1_Contig10472:1..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: QKI_HORSE (Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.328e-30
Identity = 63/130 (48.46%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  502 GLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:   77 GPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: QKI_FELCA (Protein quaking OS=Felis catus GN=QKI PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.328e-30
Identity = 63/130 (48.46%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  502 GLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:   77 GPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: QKI_CANFA (Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.328e-30
Identity = 63/130 (48.46%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  502 GLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:   77 GPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: QKI_BOVIN (Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.328e-30
Identity = 63/130 (48.46%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  502 GLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:   77 GPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: QKIB_XENLA (Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.328e-30
Identity = 63/130 (48.46%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  502 GLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:   78 GPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 207          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: QKI_CHICK (Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.347e-30
Identity = 63/130 (48.46%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  502 GLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            G IV+   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:   77 GPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: QKIB_DANRE (Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.684e-30
Identity = 62/130 (47.69%), Postives = 91/130 (70.00%), Query Frame = 1
Query:  502 GLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            G I +   ++ +PV++YP+FNFVGR+LGPRG + K++EA T C++++RG+GS++D  +EE  RGKP +EHLNE LH+L+  E      + +L +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:   77 GPIAQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: QKIA_DANRE (Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 8.198e-29
Identity = 61/130 (46.92%), Postives = 90/130 (69.23%), Query Frame = 1
Query:  502 GLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            G IV    ++ +PV++YP++NFVGR+LGPRG + K++EA T C++++RGR S++D  +EE  RGKP +EHLNE LH+L+  E      + ++ +A E ++ LL P  E  D  KK QL ELA+LNGT R+
Sbjct:   77 GPIVHLQEKLFVPVKEYPDYNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDTQTRAEIKMRRAVEEVKKLLVPAAEGEDNLKKMQLMELAILNGTYRD 206          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: HOW_DROME (Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.645e-28
Identity = 57/130 (43.85%), Postives = 88/130 (67.69%), Query Frame = 1
Query:  502 GLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            G +V    +V +PV ++P+FNFVGR+LGPRG + K++E  T C++++RG+GS++D  +E+  RGKP +EHL++ LH+L+  E        +L QA   ++ LL P  E  D  KK+QL ELA++NGT R+
Sbjct:  132 GSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRD 261          

HSP 2 Score: 23.8682 bits (50), Expect = 4.645e-28
Identity = 11/29 (37.93%), Postives = 19/29 (65.52%), Query Frame = 3
Query:  354 YLSELLAERHKLNPFLPVLPNAYRLLNQD 440
            YL++LL +R +L  F  V  +  RLL+++
Sbjct:   78 YLAQLLKDRKQLAAFPNVFTHVERLLDEE 106          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: GLD1_CAEEL (Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis elegans GN=gld-1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.976e-27
Identity = 57/135 (42.22%), Postives = 90/135 (66.67%), Query Frame = 1
Query:  499 SGLIVKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSP 903
            +G ++  T ++ +P  +YP++NFVGR+LGPRG + K++E  T C++++RG+GS++D ++E   RGK  +EHL + LH+LV+ E     V  +L  A E ++ LL P  E  D  K++QL ELA++NGT R   SP
Sbjct:  199 AGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKSP 333          

HSP 2 Score: 22.3274 bits (46), Expect = 4.976e-27
Identity = 10/30 (33.33%), Postives = 18/30 (60.00%), Query Frame = 3
Query:  351 KYLSELLAERHKLNPFLPVLPNAYRLLNQD 440
            +YL++L+ E+  L  F  +  N  RLL+ +
Sbjct:  148 EYLADLVKEKKHLTLFPHMFSNVERLLDDE 177          
The following BLAST results are available for this feature:
BLAST of FC877896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
QKI_HORSE3.328e-3048.46Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1[more]
QKI_FELCA3.328e-3048.46Protein quaking OS=Felis catus GN=QKI PE=2 SV=1[more]
QKI_CANFA3.328e-3048.46Protein quaking OS=Canis familiaris GN=QKI PE=2 SV... [more]
QKI_BOVIN3.328e-3048.46Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1[more]
QKIB_XENLA3.328e-3048.46Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 ... [more]
QKI_CHICK4.347e-3048.46Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2[more]
QKIB_DANRE9.684e-3047.69Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1[more]
QKIA_DANRE8.198e-2946.92Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2[more]
HOW_DROME4.645e-2843.85Protein held out wings OS=Drosophila melanogaster ... [more]
GLD1_CAEEL4.976e-2742.22Female germline-specific tumor suppressor gld-1 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO07RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877896 ID=FC877896; Name=FC877896; organism=Citrus clementina; type=EST; length=923bp
CTACGGTAGGCAGCCACTAGTTAGATTAGCGAGTGTGTGTCTGGTCGGGA
TCATCCCACCAGCTACACAAATCTGCAGACAGCCGAACGCCACCTTCGTC
ATCATCAATCATCGCAATCTTCCGTCCGCCGTACGCTTCTCATCGCCGAT
CGTACCGCTGAAGCCACCGCCTGGATCTGATAAAGTGACCCGACGGCGAC
GACCGTAGACACTAACAGCAGAAAACTAACTTAACGATGGCGTCATCAGG
TGGAGGCAGGTTCATGGCCTACTCGCTGTCACCTTCTGCTCCTCACTCTC
CTCACCTCCCCTCTCTCCGCTCCGCATCCTCCGCTATCCTCGATCAAGAA
AAATATCTCTCTGAGTTACTAGCTGAGCGTCATAAGCTTAATCCATTCCT
GCCTGTGTTACCGAATGCTTACCGGCTGTTGAACCAGGATTTCTGGTTTA
ATGCAGTCATCATCAGCACAAAACTGGCTTAGCTCACAAGGTAGCTCATC
AGGTCTCATTGTTAAGAGGACAATCAGAGTGGATATTCCAGTCGAAAAAT
ATCCTAATTTCAACTTTGTCGGGCGCCTCCTTGGTCCTCGAGGCAACTCG
CTTAAGCGAGTCGAAGCTAGTACAGAATGCCGTGTTCTGATTAGGGGACG
CGGCAGTATAAAGGATCCAGCAAGGGAAGAAATGATGAGAGGAAAACCTG
GGTATGAACATTTGAATGAGCCTCTCCATATCCTGGTTGAGGCAGAATTG
CCAGTTGAGATAGTTGATGCTCGCCTAATGCAAGCACGTGAGATACTTGA
AGATTTGCTCAAGCCTGTGGATGAATCCCATGATTTCTACAAGAAACAAC
AACTGCGAGAGCTTGCAATGCTCAATGGTACACTTCGTGAAGAAGGGTCT
CCAATGTCTGGGTTAGTGTCCCC
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