FC877896

Overview
NameFC877896
Unique NameFC877896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10472 contig Ccv1_Contig10472:1..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.483e-25
Identity = 57/126 (45.24%), Postives = 87/126 (69.05%), Query Frame = 1
Query:  511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT 882
            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y HL++ LH+L+E   P     +R+  A E ++  L P  + +D  +++QLREL+ LNG+
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          

HSP 2 Score: 27.335 bits (59), Expect = 7.483e-25
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  339 LDQEKYLSELLAERHKLNP 395
            +++EKYL EL+AE+  L+P
Sbjct:    1 MEEEKYLPELMAEKDSLDP 19          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.650e-24
Identity = 57/126 (45.24%), Postives = 87/126 (69.05%), Query Frame = 1
Query:  511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT 882
            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y HL++ LH+L+E   P     +R+  A E ++  L P  + +D  +++QLREL+ LNG+
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          

HSP 2 Score: 26.1794 bits (56), Expect = 1.650e-24
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  339 LDQEKYLSELLAERHKLNP 395
            + +EKYL EL+AE+  L+P
Sbjct:    1 MGEEKYLPELMAEKDSLDP 19          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.731e-24
Identity = 56/126 (44.44%), Postives = 86/126 (68.25%), Query Frame = 1
Query:  511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT 882
            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D  +EE +R  G+  Y HL++ LH+L+E   P     +R+  A E ++  L P  + +D  +++QLREL+ LNG+
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          

HSP 2 Score: 26.1794 bits (56), Expect = 4.731e-24
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  339 LDQEKYLSELLAERHKLNP 395
            + +EKYL EL+AE+  L+P
Sbjct:    1 MGEEKYLPELMAEKDSLDP 19          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.043e-23
Identity = 55/126 (43.65%), Postives = 85/126 (67.46%), Query Frame = 1
Query:  511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT 882
            +K + RV IPV++YP FNFVG+LLGPRGNS+KR++  T  ++ I G+GS++D  +EE +R  G+  Y HL+  LH+L+E   P     +R+  A E ++  L P  + +D  +++QLREL+ LNG+
Sbjct:   58 IKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          

HSP 2 Score: 26.1794 bits (56), Expect = 1.043e-23
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  339 LDQEKYLSELLAERHKLN 392
            +DQ+KYL EL+AE+  L+
Sbjct:    1 MDQDKYLPELVAEKESLD 18          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR3_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.766e-23
Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNG 879
            +V IPV+++P FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y HLN+ LH+L+E   P     AR+  A E ++  L P  + +D  ++ QL+EL  LNG
Sbjct:   59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176          

HSP 2 Score: 29.6462 bits (65), Expect = 1.766e-23
Identity = 15/32 (46.88%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  345 QEKYLSELLAERHKLNPFLPVLPNAYRLLNQD 440
            +EKYL EL+AE+  L+   P   +A RL+NQ+
Sbjct:    2 EEKYLPELMAEKDSLD---PSFTHALRLVNQE 30          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.890e-23
Identity = 54/126 (42.86%), Postives = 85/126 (67.46%), Query Frame = 1
Query:  511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT 882
            +K + RV IPV++YP FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D  +EE +R   +  + HL++ LH+L+E   P     +R+  A E ++  L P  + +D  +++QLREL+ LNG+
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181          

HSP 2 Score: 28.8758 bits (63), Expect = 3.890e-23
Identity = 14/34 (41.18%), Postives = 24/34 (70.59%), Query Frame = 3
Query:  339 LDQEKYLSELLAERHKLNPFLPVLPNAYRLLNQD 440
            +++EKYL EL+AE+  L+   P   +A RLL+++
Sbjct:    1 MEEEKYLPELMAEKDSLD---PSFVHAMRLLDEE 31          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR3_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.062e-23
Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNG 879
            +V IPV+++P FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y HLN+ LH+L+E   P     AR+  A E ++  L P  + +D  ++ QL+EL  LNG
Sbjct:   59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLNG 176          

HSP 2 Score: 28.1054 bits (61), Expect = 5.062e-23
Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  345 QEKYLSELLAERHKLNPFLPVLPNAYRLLNQD 440
            +EKYL EL+AE+  L+   P   +A RL+N++
Sbjct:    2 EEKYLPELMAEKDSLD---PSFTHALRLVNRE 30          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR3_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.062e-23
Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNG 879
            +V IPV+++P FNFVG+LLGPRGNSLKR++  T  ++ I G+GS++D A+EE +R  G+  Y HLN+ LH+L+E   P     AR+  A E ++  L P  + +D  ++ QL+EL  LNG
Sbjct:   59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176          

HSP 2 Score: 28.1054 bits (61), Expect = 5.062e-23
Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  345 QEKYLSELLAERHKLNPFLPVLPNAYRLLNQD 440
            +EKYL EL+AE+  L+   P   +A RL+N++
Sbjct:    2 EEKYLPELMAEKDSLD---PSFTHALRLVNRE 30          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.452e-19
Identity = 54/134 (40.30%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT---LREEGSPMSG 912
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  EL+ LNG     R  G P+ G
Sbjct:  142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNGVPEPTRGRGGPVRG 273          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_ASHGO (Branchpoint-bridging protein OS=Ashbya gossypii GN=BBP PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19
Identity = 52/124 (41.94%), Postives = 80/124 (64.52%), Query Frame = 1
Query:  535 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKD-PAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSP 903
            IP+  YP  NFVG LLGPRGN+LK+++  + C+++IRGRGS+K+  A  ++ +G     ++NEPLH ++ A+   +I          I++ +  P  E  + +K+ QLRELA+LNGTLRE+  P
Sbjct:  155 IPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSVKEGKAATDLPKGA---MNMNEPLHCVISADTEEKIPLGINAGESIIIKAITFP--EGQNDFKRGQLRELAVLNGTLREDNRP 273          
The following BLAST results are available for this feature:
BLAST of FC877896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
KHDR2_HUMAN7.483e-2545.24KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_RAT1.650e-2445.24KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_MOUSE4.731e-2444.44KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_DANRE1.043e-2343.65KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_HUMAN1.766e-2345.83KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_XENTR3.890e-2342.86KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_RAT5.062e-2345.83KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_MOUSE5.062e-2345.83KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_CHICK3.452e-1940.30KH domain-containing, RNA-binding, signal transduc... [more]
BBP_ASHGO4.509e-1941.94Branchpoint-bridging protein OS=Ashbya gossypii GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO07RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877896 ID=FC877896; Name=FC877896; organism=Citrus clementina; type=EST; length=923bp
CTACGGTAGGCAGCCACTAGTTAGATTAGCGAGTGTGTGTCTGGTCGGGA
TCATCCCACCAGCTACACAAATCTGCAGACAGCCGAACGCCACCTTCGTC
ATCATCAATCATCGCAATCTTCCGTCCGCCGTACGCTTCTCATCGCCGAT
CGTACCGCTGAAGCCACCGCCTGGATCTGATAAAGTGACCCGACGGCGAC
GACCGTAGACACTAACAGCAGAAAACTAACTTAACGATGGCGTCATCAGG
TGGAGGCAGGTTCATGGCCTACTCGCTGTCACCTTCTGCTCCTCACTCTC
CTCACCTCCCCTCTCTCCGCTCCGCATCCTCCGCTATCCTCGATCAAGAA
AAATATCTCTCTGAGTTACTAGCTGAGCGTCATAAGCTTAATCCATTCCT
GCCTGTGTTACCGAATGCTTACCGGCTGTTGAACCAGGATTTCTGGTTTA
ATGCAGTCATCATCAGCACAAAACTGGCTTAGCTCACAAGGTAGCTCATC
AGGTCTCATTGTTAAGAGGACAATCAGAGTGGATATTCCAGTCGAAAAAT
ATCCTAATTTCAACTTTGTCGGGCGCCTCCTTGGTCCTCGAGGCAACTCG
CTTAAGCGAGTCGAAGCTAGTACAGAATGCCGTGTTCTGATTAGGGGACG
CGGCAGTATAAAGGATCCAGCAAGGGAAGAAATGATGAGAGGAAAACCTG
GGTATGAACATTTGAATGAGCCTCTCCATATCCTGGTTGAGGCAGAATTG
CCAGTTGAGATAGTTGATGCTCGCCTAATGCAAGCACGTGAGATACTTGA
AGATTTGCTCAAGCCTGTGGATGAATCCCATGATTTCTACAAGAAACAAC
AACTGCGAGAGCTTGCAATGCTCAATGGTACACTTCGTGAAGAAGGGTCT
CCAATGTCTGGGTTAGTGTCCCC
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