FC877896
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 7.483e-25 Identity = 57/126 (45.24%), Postives = 87/126 (69.05%), Query Frame = 1 Query: 511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT 882 +K + RV IPV++YP FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D A+EE +R G+ Y HL++ LH+L+E P +R+ A E ++ L P + +D +++QLREL+ LNG+ Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181 HSP 2 Score: 27.335 bits (59), Expect = 7.483e-25 Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 3 Query: 339 LDQEKYLSELLAERHKLNP 395 +++EKYL EL+AE+ L+P Sbjct: 1 MEEEKYLPELMAEKDSLDP 19
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.650e-24 Identity = 57/126 (45.24%), Postives = 87/126 (69.05%), Query Frame = 1 Query: 511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT 882 +K + RV IPV++YP FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D A+EE +R G+ Y HL++ LH+L+E P +R+ A E ++ L P + +D +++QLREL+ LNG+ Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181 HSP 2 Score: 26.1794 bits (56), Expect = 1.650e-24 Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 3 Query: 339 LDQEKYLSELLAERHKLNP 395 + +EKYL EL+AE+ L+P Sbjct: 1 MGEEKYLPELMAEKDSLDP 19
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 4.731e-24 Identity = 56/126 (44.44%), Postives = 86/126 (68.25%), Query Frame = 1 Query: 511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT 882 +K + RV IPV++YP FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D +EE +R G+ Y HL++ LH+L+E P +R+ A E ++ L P + +D +++QLREL+ LNG+ Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181 HSP 2 Score: 26.1794 bits (56), Expect = 4.731e-24 Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 3 Query: 339 LDQEKYLSELLAERHKLNP 395 + +EKYL EL+AE+ L+P Sbjct: 1 MGEEKYLPELMAEKDSLDP 19
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.043e-23 Identity = 55/126 (43.65%), Postives = 85/126 (67.46%), Query Frame = 1 Query: 511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT 882 +K + RV IPV++YP FNFVG+LLGPRGNS+KR++ T ++ I G+GS++D +EE +R G+ Y HL+ LH+L+E P +R+ A E ++ L P + +D +++QLREL+ LNG+ Sbjct: 58 IKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181 HSP 2 Score: 26.1794 bits (56), Expect = 1.043e-23 Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 3 Query: 339 LDQEKYLSELLAERHKLN 392 +DQ+KYL EL+AE+ L+ Sbjct: 1 MDQDKYLPELVAEKESLD 18
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR3_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.766e-23 Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 1 Query: 526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNG 879 +V IPV+++P FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D A+EE +R G+ Y HLN+ LH+L+E P AR+ A E ++ L P + +D ++ QL+EL LNG Sbjct: 59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176 HSP 2 Score: 29.6462 bits (65), Expect = 1.766e-23 Identity = 15/32 (46.88%), Postives = 22/32 (68.75%), Query Frame = 3 Query: 345 QEKYLSELLAERHKLNPFLPVLPNAYRLLNQD 440 +EKYL EL+AE+ L+ P +A RL+NQ+ Sbjct: 2 EEKYLPELMAEKDSLD---PSFTHALRLVNQE 30
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.890e-23 Identity = 54/126 (42.86%), Postives = 85/126 (67.46%), Query Frame = 1 Query: 511 VKRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT 882 +K + RV IPV++YP FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D +EE +R + + HL++ LH+L+E P +R+ A E ++ L P + +D +++QLREL+ LNG+ Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGS 181 HSP 2 Score: 28.8758 bits (63), Expect = 3.890e-23 Identity = 14/34 (41.18%), Postives = 24/34 (70.59%), Query Frame = 3 Query: 339 LDQEKYLSELLAERHKLNPFLPVLPNAYRLLNQD 440 +++EKYL EL+AE+ L+ P +A RLL+++ Sbjct: 1 MEEEKYLPELMAEKDSLD---PSFVHAMRLLDEE 31
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR3_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.062e-23 Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 1 Query: 526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNG 879 +V IPV+++P FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D A+EE +R G+ Y HLN+ LH+L+E P AR+ A E ++ L P + +D ++ QL+EL LNG Sbjct: 59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLNG 176 HSP 2 Score: 28.1054 bits (61), Expect = 5.062e-23 Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = 3 Query: 345 QEKYLSELLAERHKLNPFLPVLPNAYRLLNQD 440 +EKYL EL+AE+ L+ P +A RL+N++ Sbjct: 2 EEKYLPELMAEKDSLD---PSFTHALRLVNRE 30
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR3_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.062e-23 Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 1 Query: 526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNG 879 +V IPV+++P FNFVG+LLGPRGNSLKR++ T ++ I G+GS++D A+EE +R G+ Y HLN+ LH+L+E P AR+ A E ++ L P + +D ++ QL+EL LNG Sbjct: 59 KVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176 HSP 2 Score: 28.1054 bits (61), Expect = 5.062e-23 Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = 3 Query: 345 QEKYLSELLAERHKLNPFLPVLPNAYRLLNQD 440 +EKYL EL+AE+ L+ P +A RL+N++ Sbjct: 2 EEKYLPELMAEKDSLD---PSFTHALRLVNRE 30
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.452e-19 Identity = 54/134 (40.30%), Postives = 81/134 (60.45%), Query Frame = 1 Query: 526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT---LREEGSPMSG 912 RV IPV++YP FNFVG++LGP+GN++KR++ T ++ + G+GS++D A+EE +R G P Y HLN LH+ +E P A + A E ++ L P + D ++Q EL+ LNG R G P+ G Sbjct: 142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNGVPEPTRGRGGPVRG 273
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_ASHGO (Branchpoint-bridging protein OS=Ashbya gossypii GN=BBP PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.509e-19 Identity = 52/124 (41.94%), Postives = 80/124 (64.52%), Query Frame = 1 Query: 535 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKD-PAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSP 903 IP+ YP NFVG LLGPRGN+LK+++ + C+++IRGRGS+K+ A ++ +G ++NEPLH ++ A+ +I I++ + P E + +K+ QLRELA+LNGTLRE+ P Sbjct: 155 IPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSVKEGKAATDLPKGA---MNMNEPLHCVISADTEEKIPLGINAGESIIIKAITFP--EGQNDFKRGQLRELAVLNGTLREDNRP 273 The following BLAST results are available for this feature:
BLAST of FC877896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 47
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877896 ID=FC877896; Name=FC877896; organism=Citrus clementina; type=EST; length=923bpback to top |