FC877896
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19 Identity = 54/134 (40.30%), Postives = 81/134 (60.45%), Query Frame = 1 Query: 526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT---LREEGSPMSG 912 RV IPV++YP FNFVG++LGP+GN++KR++ T ++ + G+GS++D A+EE +R G P Y HLN LH+ +E P A + A E ++ L P + D ++Q EL+ LNG R G P+ G Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNGVPEPSRGRGVPVRG 290
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_DICDI (Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.004e-18 Identity = 53/133 (39.85%), Postives = 85/133 (63.91%), Query Frame = 1 Query: 514 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHL--NEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSPM 906 K+T ++ IP++ +P +NF+G ++GPRGN+ KR+E + ++ IRG+GS +D GKP N+ LH+L+ A + VD +L +A ++ + L PV+E + +K+QQLRELA +NGTLRE + M Sbjct: 178 KKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRD--------GKPTKLQFQENDELHVLLTA----DTVD-QLDKAEVLVREFLIPVEEGKNEHKRQQLRELAEMNGTLRERPAYM 297
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18 Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 1 Query: 526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNG 879 RV IPV++YP FNFVG++LGP+GN++KR++ T ++ + G+GS++D A+EE +R G P Y HLN LH+ +E P A + A E ++ L P + D ++Q EL+ LNG Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18 Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 1 Query: 526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNG 879 RV IPV++YP FNFVG++LGP+GN++KR++ T ++ + G+GS++D A+EE +R G P Y HLN LH+ +E P A + A E ++ L P + D ++Q EL+ LNG Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_CANAL (Branchpoint-bridging protein OS=Candida albicans GN=BBP PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.923e-18 Identity = 50/126 (39.68%), Postives = 82/126 (65.08%), Query Frame = 1 Query: 517 RTI-RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891 RT+ R+ +PV+ YP+ NFVG L+GPRGN+LK+++ + R+ IRG+GS+K+ + + + LH+L+ A+ P++I A + EI++ L+ + +F K+ QL+ELA+LNGTLRE Sbjct: 147 RTVERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVLITADSPLKISKA-VKLVNEIIDKLIFS-PQGMNFMKRDQLKELAVLNGTLRE 270
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4) HSP 1 Score: 92.4337 bits (228), Expect = 3.817e-18 Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKD----PAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREE 894 +V IP ++YP NFVG L+GPRGN+LK +E +++IRG+GS+K+ +M+ G+ +EPLH LV A +E V + Q R IL+ ++ ++ +D +K QLRELA LNGTLRE+ Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE------DEPLHALVTAN-TMENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.817e-18 Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 535 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSP 903 IPV++YP+ NFVG LLGPRG +L++++ + C++ IRGRGS+K+ + PG + +PLH L+ A+ +I + +++ + P E + K+ QLRELA LNGTLRE+ P Sbjct: 154 IPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL--PPGAMNFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSP--EGQNDLKRGQLRELAELNGTLREDNRP 272
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5) HSP 1 Score: 91.6633 bits (226), Expect = 6.511e-18 Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 1 Query: 526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHL---NEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREE 894 +V IP ++YP NFVG L+GPRGN+LK +E +++IRG+GS+ EE G+ + L +EPLH LV A +E V + Q R IL+ ++ ++ +D +K QLRELA LNGTLRE+ Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSV-----EEGKVGRKDGQMLPGEDEPLHALVTAN-TMENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_CANGA (Branchpoint-bridging protein OS=Candida glabrata GN=BBP PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.450e-17 Identity = 49/123 (39.84%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 535 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSP 903 IPV +YP NFVG LLGPRG +L++++ + C++ IRGRGS+K+ + PG ++PLH L+ A+ +I + +++ + P E + K+ QLRELA LNGTLRE+ P Sbjct: 140 IPVSQYPQINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDL--PPGAMDFSDPLHCLIIADNEEKIENGIKACRNIVIKAVTSP--EGQNELKRGQLRELAELNGTLREDNRP 258
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_ASPFU (Branchpoint-bridging protein OS=Aspergillus fumigatus GN=bbp PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.573e-16 Identity = 46/129 (35.66%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLN---EPLHILVEAELPVEIVDARLMQAREILEDLLK---PVDESHDFYKKQQLRELAMLNGTLREE 894 +V +PV YP NF+G L+GPRGN+LK++EA + ++ IRG+GS+K+ +G+ H + E LH L+ A+ + ++ +A++++ ++++ + E + K+ QLRELA LNGTLR++ Sbjct: 184 KVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEG------KGRSDAAHASNQEEDLHCLIMAD-----TEEKVNKAKKLVHNVIETAASIPEGQNELKRNQLRELAALNGTLRDD 301 The following BLAST results are available for this feature:
BLAST of FC877896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 47
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877896 ID=FC877896; Name=FC877896; organism=Citrus clementina; type=EST; length=923bpback to top |