FC877896

Overview
NameFC877896
Unique NameFC877896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10472 contig Ccv1_Contig10472:1..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.691e-19
Identity = 54/134 (40.30%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGT---LREEGSPMSG 912
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  EL+ LNG     R  G P+ G
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNGVPEPSRGRGVPVRG 290          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_DICDI (Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.004e-18
Identity = 53/133 (39.85%), Postives = 85/133 (63.91%), Query Frame = 1
Query:  514 KRTIRVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHL--NEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSPM 906
            K+T ++ IP++ +P +NF+G ++GPRGN+ KR+E  +  ++ IRG+GS +D        GKP       N+ LH+L+ A    + VD +L +A  ++ + L PV+E  + +K+QQLRELA +NGTLRE  + M
Sbjct:  178 KKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRD--------GKPTKLQFQENDELHVLLTA----DTVD-QLDKAEVLVREFLIPVEEGKNEHKRQQLRELAEMNGTLRERPAYM 297          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNG 879
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  EL+ LNG
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMR--GKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNG 879
            RV IPV++YP FNFVG++LGP+GN++KR++  T  ++ + G+GS++D A+EE +R  G P Y HLN  LH+ +E   P     A +  A E ++  L P  +  D   ++Q  EL+ LNG
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_CANAL (Branchpoint-bridging protein OS=Candida albicans GN=BBP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.923e-18
Identity = 50/126 (39.68%), Postives = 82/126 (65.08%), Query Frame = 1
Query:  517 RTI-RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLRE 891
            RT+ R+ +PV+ YP+ NFVG L+GPRGN+LK+++  +  R+ IRG+GS+K+    +          + + LH+L+ A+ P++I  A +    EI++ L+    +  +F K+ QL+ELA+LNGTLRE
Sbjct:  147 RTVERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVLITADSPLKISKA-VKLVNEIIDKLIFS-PQGMNFMKRDQLKELAVLNGTLRE 270          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 3.817e-18
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKD----PAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREE 894
            +V IP ++YP  NFVG L+GPRGN+LK +E     +++IRG+GS+K+        +M+ G+      +EPLH LV A   +E V   + Q R IL+  ++  ++ +D  +K QLRELA LNGTLRE+
Sbjct:  139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE------DEPLHALVTAN-TMENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.817e-18
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 1
Query:  535 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSP 903
            IPV++YP+ NFVG LLGPRG +L++++  + C++ IRGRGS+K+      +   PG  +  +PLH L+ A+   +I     +    +++ +  P  E  +  K+ QLRELA LNGTLRE+  P
Sbjct:  154 IPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL--PPGAMNFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSP--EGQNDLKRGQLRELAELNGTLREDNRP 272          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5)

HSP 1 Score: 91.6633 bits (226), Expect = 6.511e-18
Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHL---NEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREE 894
            +V IP ++YP  NFVG L+GPRGN+LK +E     +++IRG+GS+     EE   G+   + L   +EPLH LV A   +E V   + Q R IL+  ++  ++ +D  +K QLRELA LNGTLRE+
Sbjct:  139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSV-----EEGKVGRKDGQMLPGEDEPLHALVTAN-TMENVKKAVEQIRNILKQGIETPEDQNDL-RKMQLRELARLNGTLRED 257          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_CANGA (Branchpoint-bridging protein OS=Candida glabrata GN=BBP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.450e-17
Identity = 49/123 (39.84%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  535 IPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSP 903
            IPV +YP  NFVG LLGPRG +L++++  + C++ IRGRGS+K+      +   PG    ++PLH L+ A+   +I +        +++ +  P  E  +  K+ QLRELA LNGTLRE+  P
Sbjct:  140 IPVSQYPQINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDL--PPGAMDFSDPLHCLIIADNEEKIENGIKACRNIVIKAVTSP--EGQNELKRGQLRELAELNGTLREDNRP 258          
BLAST of FC877896 vs. ExPASy Swiss-Prot
Match: BBP_ASPFU (Branchpoint-bridging protein OS=Aspergillus fumigatus GN=bbp PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.573e-16
Identity = 46/129 (35.66%), Postives = 81/129 (62.79%), Query Frame = 1
Query:  526 RVDIPVEKYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLN---EPLHILVEAELPVEIVDARLMQAREILEDLLK---PVDESHDFYKKQQLRELAMLNGTLREE 894
            +V +PV  YP  NF+G L+GPRGN+LK++EA +  ++ IRG+GS+K+       +G+    H +   E LH L+ A+      + ++ +A++++ ++++    + E  +  K+ QLRELA LNGTLR++
Sbjct:  184 KVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEG------KGRSDAAHASNQEEDLHCLIMAD-----TEEKVNKAKKLVHNVIETAASIPEGQNELKRNQLRELAALNGTLRDD 301          
The following BLAST results are available for this feature:
BLAST of FC877896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
KHDR1_HUMAN7.691e-1940.30KH domain-containing, RNA-binding, signal transduc... [more]
BBP_DICDI1.004e-1839.85Branchpoint-bridging protein OS=Dictyostelium disc... [more]
KHDR1_RAT2.238e-1841.67KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_MOUSE2.238e-1841.67KH domain-containing, RNA-binding, signal transduc... [more]
BBP_CANAL2.923e-1839.68Branchpoint-bridging protein OS=Candida albicans G... [more]
SF01_HUMAN3.817e-1842.52Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4[more]
BBP_YEAST3.817e-1839.84Branchpoint-bridging protein OS=Saccharomyces cere... [more]
SF01_MOUSE6.511e-1843.65Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5[more]
BBP_CANGA1.450e-1739.84Branchpoint-bridging protein OS=Candida glabrata G... [more]
BBP_ASPFU3.573e-1635.66Branchpoint-bridging protein OS=Aspergillus fumiga... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO07RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877896 ID=FC877896; Name=FC877896; organism=Citrus clementina; type=EST; length=923bp
CTACGGTAGGCAGCCACTAGTTAGATTAGCGAGTGTGTGTCTGGTCGGGA
TCATCCCACCAGCTACACAAATCTGCAGACAGCCGAACGCCACCTTCGTC
ATCATCAATCATCGCAATCTTCCGTCCGCCGTACGCTTCTCATCGCCGAT
CGTACCGCTGAAGCCACCGCCTGGATCTGATAAAGTGACCCGACGGCGAC
GACCGTAGACACTAACAGCAGAAAACTAACTTAACGATGGCGTCATCAGG
TGGAGGCAGGTTCATGGCCTACTCGCTGTCACCTTCTGCTCCTCACTCTC
CTCACCTCCCCTCTCTCCGCTCCGCATCCTCCGCTATCCTCGATCAAGAA
AAATATCTCTCTGAGTTACTAGCTGAGCGTCATAAGCTTAATCCATTCCT
GCCTGTGTTACCGAATGCTTACCGGCTGTTGAACCAGGATTTCTGGTTTA
ATGCAGTCATCATCAGCACAAAACTGGCTTAGCTCACAAGGTAGCTCATC
AGGTCTCATTGTTAAGAGGACAATCAGAGTGGATATTCCAGTCGAAAAAT
ATCCTAATTTCAACTTTGTCGGGCGCCTCCTTGGTCCTCGAGGCAACTCG
CTTAAGCGAGTCGAAGCTAGTACAGAATGCCGTGTTCTGATTAGGGGACG
CGGCAGTATAAAGGATCCAGCAAGGGAAGAAATGATGAGAGGAAAACCTG
GGTATGAACATTTGAATGAGCCTCTCCATATCCTGGTTGAGGCAGAATTG
CCAGTTGAGATAGTTGATGCTCGCCTAATGCAAGCACGTGAGATACTTGA
AGATTTGCTCAAGCCTGTGGATGAATCCCATGATTTCTACAAGAAACAAC
AACTGCGAGAGCTTGCAATGCTCAATGGTACACTTCGTGAAGAAGGGTCT
CCAATGTCTGGGTTAGTGTCCCC
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