FC877899

Overview
NameFC877899
Unique NameFC877899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877899_ssr37 microsatellite FC877899_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7906 contig Ccv1_Contig7906:95..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 8.891e-57
Identity = 106/190 (55.79%), Postives = 137/190 (72.11%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 660
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+     +L
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 196          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 4.412e-56
Identity = 106/190 (55.79%), Postives = 137/190 (72.11%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 660
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+    ++L
Sbjct:    7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVL 196          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4)

HSP 1 Score: 216.468 bits (550), Expect = 1.677e-55
Identity = 105/190 (55.26%), Postives = 137/190 (72.11%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 660
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQ+ +LR +AEK  E+K+    ++L
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVL 196          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.125e-51
Identity = 100/182 (54.95%), Postives = 125/182 (68.68%), Query Frame = 1
Query:  115 MLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 660
            +LGRLA+IVA E+L G KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++GVP PYDK KRMV+P ALK++RL+   K+ LLGRLA EVGW Y      LE+KRKE++++ Y +KK + KL   AEK  E  +     +L
Sbjct:    1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVL 182          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.243e-50
Identity = 100/190 (52.63%), Postives = 130/190 (68.42%), Query Frame = 1
Query:   70 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERS--QVAYERK-KQLNKLRAKAEKVAE 630
            +G   K +V+D R H+LGRLA+++AK LL G KVV VRCE+I +SG   R K+K+M FLRKR N  P+ GP HFRAP+KI W+TVRGMIPHKT            Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRL+ EVGW Y D +R+LE KRK +S   +AYE+K K++ K     EKVA+
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITK--ESGEKVAK 189          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.121e-50
Identity = 97/181 (53.59%), Postives = 127/181 (70.17%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAE 630
            VV+D + H+LGRLASIVAK+LLNGQK+V VRCE + +SG   R K+KY  +LRK     P+ G P HFRAP++IF++ VRGMIPHKT            +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRL+SEVGW Y D +  LE++RK +    YERKK   +  ++A+K A+
Sbjct:    8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.770e-50
Identity = 91/184 (49.46%), Postives = 129/184 (70.11%), Query Frame = 1
Query:   70 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEK 621
            +G+  + VV+D R H+LGRLAS+VAK LL G KV  VRCEE+ +SG   R K+K++ +LRKR N  P+ GP HFRAP++IF++ VRGMIPHKT            ++G+P+PYDK +R+V+P A++VL L+   KYC +GRL+ EVGW+Y D I+ LE+KRK + +V  +  ++L KL  KA +
Sbjct:    2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARE 185          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.171e-50
Identity = 96/201 (47.76%), Postives = 131/201 (65.17%), Query Frame = 1
Query:   73 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 675
            G+  + +++D ++H+LGRLASIVAK+LL G KVV +R EEI +SG   R K+KYM FLRKR N  P+ G  H+RAP KIFWRTVRGM+PHKT            YEGVPA Y K K +  P A +  RLQ   K+C++GRL+ EVGW + D + +LE KRK +    +E+KK+++KL  +A+K A  K+     I+  + Y
Sbjct:    2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.060e-50
Identity = 95/180 (52.78%), Postives = 126/180 (70.00%), Query Frame = 1
Query:   70 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERS--QVAYERK-KQLNK 600
            +G   K +V+D R H+LGRLA+++AK LL G KVV VRCE++ +SG   R K+K+M FLRKR N  P+ GP HFRAP+KI W+TVRGMIPHKT            Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRL+ EVGW Y + +R+LE KRK ++  +VAYERK K++ K
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERKLKKITK 181          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.796e-49
Identity = 97/190 (51.05%), Postives = 129/190 (67.89%), Query Frame = 1
Query:   85 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLD 654
            K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Y D + +LE++RK +S   Y+ K       AK +K+A  K  S ++
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAK------LAKQKKIASAKAASSVN 189          
The following BLAST results are available for this feature:
BLAST of FC877899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL13A_MACFA8.891e-5755.7960S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_RAT4.412e-5655.7960S ribosomal protein L13a OS=Rattus norvegicus GN... [more]
RL13A_MOUSE1.677e-5555.2660S ribosomal protein L13a OS=Mus musculus GN=Rpl1... [more]
RL13A_SALTR1.125e-5154.9560S ribosomal protein L13a (Fragment) OS=Salmo tru... [more]
RL13A_SPOFR1.243e-5052.6360S ribosomal protein L13a OS=Spodoptera frugiperd... [more]
RL16_NEUCR2.121e-5053.5960S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL13A_DROME2.770e-5049.4660S ribosomal protein L13a OS=Drosophila melanogas... [more]
RL13A_CAEEL6.171e-5047.7660S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL13A_CHOPR8.060e-5052.7860S ribosomal protein L13a OS=Choristoneura parall... [more]
RL16A_SCHPO1.796e-4951.0560S ribosomal protein L16-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877899 ID=FC877899; Name=FC877899; organism=Citrus clementina; type=EST; length=892bp
AGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAGAGAGAGGAAC
CCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGAGTGGTGGTGG
ACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGTGGCCAAGGAG
CTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAGAGATTTGCAT
GTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGGTTCCTTCGCA
AGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTTCCGCGCCCCT
GCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGCATAAGACCAA
GCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAAGGGGTCCCTG
CACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGCTCTCAAGGTT
TTGAGGCTTCAGAAGGGTCACAAGTACTGCTTGTTAGGTCGCCTGGCATC
TGAGGTTGGATGGAATTATTATGACACCATCAGGGAGCTTGAGAAGAAGA
GAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAAGAAGCAGCTCAACAAA
CTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGAAACTTGGCTCGCAATT
GGACATCCTTGCTCCTGTCAAATATTGATCAGTTAGCTTGTTGAGAACAA
TTTTGTTGGGCATTGTCTTGAATTTCCTTTGTGTTTTCGACTTTGTTCAA
GACTTTTAGAAGCTAAGAATTTGATACAACTTGAGTGATTATCTTTTTTT
TTTTCCCCACTTAAAACTGATGGTTGTAGAATGATTTCGTTATATTTCTA
GATATACTGGGTGGTGTTTNAAAGGAAAAAAAAAAAAAAAAA
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