FC877899

Overview
NameFC877899
Unique NameFC877899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877899_ssr37 microsatellite FC877899_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7906 contig Ccv1_Contig7906:95..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.000e-49
Identity = 97/190 (51.05%), Postives = 129/190 (67.89%), Query Frame = 1
Query:   85 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLD 654
            K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Y D + +LE++RK +S   Y+ K       AK +K+A  K  S ++
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAK------LAKQKKIASAKEASPVN 189          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.089e-46
Identity = 94/189 (49.74%), Postives = 126/189 (66.67%), Query Frame = 1
Query:   85 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERK----KQLNKLRAKAEKVAEEKL 639
            K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+   KYC +GRL+SEVGW Y + + +LE++RK +S   Y+ K    K +N   AK +    EKL
Sbjct:    6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAKSANQKHINV--AKTKSSVNEKL 192          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.140e-46
Identity = 90/179 (50.28%), Postives = 120/179 (67.04%), Query Frame = 1
Query:   85 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEK 621
            K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+  FL   MNT  + G  H R+P+KIFWR VRGM+PHKT            +EGVPAPYDKVKR+V+P AL+V++L    KY +L RL+ EVGW Y   + +LE +RK+RS   Y +   +   R +A K
Sbjct:    5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALK 183          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 9.222e-46
Identity = 89/181 (49.17%), Postives = 119/181 (65.75%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEE 633
            VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG   R K+KY  FLRK      + GP HFRAP++IF++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+L++ VGW Y D + +LE KRK  S   Y +K+   K  A A   A E
Sbjct:    7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAE 187          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 4.577e-45
Identity = 87/181 (48.07%), Postives = 118/181 (65.19%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEE 633
            VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG   R K+KY  FLRK      + GP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+L++ VGW Y D + +LE KRK RS   Y +K+   K  + A   A E
Sbjct:    6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASE 186          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.070e-41
Identity = 81/135 (60.00%), Postives = 101/135 (74.81%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRL 495
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL
Sbjct:    3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.303e-19
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  331 MIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEK 621
            M+ HKT            ++G+P PYDK KRMV+P ALKV+RL+   K+ LLGR A EV W Y      LE+KRKE++++ Y +KKQL +LR +AEK
Sbjct:    1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHYWKKKQLMRLRKQAEK 97          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.619e-13
Identity = 46/141 (32.62%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   91 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 510
            ++++   H+LGRLAS+V+K+LL G++V+ +  E+I ++G       KY + + +   + P   GP + R P  IF RTVRGM+P+K             Y G+P  +   + + IPDA K   ++KG +   LG ++  +G
Sbjct:    4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKGME---LGEISELLG 140          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.880e-13
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   94 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 513
            V+DA  H+LGRL+S +AK LLNG+++V V  E+  ++G    + M + R+  K        GP   R P +IF RTVRGM+P K+            + GVP      +   I DAL + ++ K  KY  L  ++  +G+
Sbjct:   18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGF 153          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.344e-12
Identity = 51/143 (35.66%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   85 KRVVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 510
            K  V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R+R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + IPDA   +RL    +Y  LG ++ ++G
Sbjct:    3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMG 140          
The following BLAST results are available for this feature:
BLAST of FC877899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL16B_SCHPO4.000e-4951.0560S ribosomal protein L16-B OS=Schizosaccharomyces... [more]
RL16C_SCHPO1.089e-4649.7460S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL13A_DICDI4.140e-4650.2860S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL16A_YEAST9.222e-4649.1760S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL16B_YEAST4.577e-4548.0760S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RL13A_PIG3.070e-4160.0060S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
R13AX_HUMAN3.303e-1948.45Putative 60S ribosomal protein L13a-like MGC87657 ... [more]
RLSX_METTH4.619e-1332.62Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RL13_ARCFU7.880e-1334.2950S ribosomal protein L13P OS=Archaeoglobus fulgid... [more]
RL13_METAC1.344e-1235.6650S ribosomal protein L13P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877899 ID=FC877899; Name=FC877899; organism=Citrus clementina; type=EST; length=892bp
AGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAGAGAGAGGAAC
CCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGAGTGGTGGTGG
ACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGTGGCCAAGGAG
CTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAGAGATTTGCAT
GTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGGTTCCTTCGCA
AGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTTCCGCGCCCCT
GCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGCATAAGACCAA
GCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAAGGGGTCCCTG
CACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGCTCTCAAGGTT
TTGAGGCTTCAGAAGGGTCACAAGTACTGCTTGTTAGGTCGCCTGGCATC
TGAGGTTGGATGGAATTATTATGACACCATCAGGGAGCTTGAGAAGAAGA
GAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAAGAAGCAGCTCAACAAA
CTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGAAACTTGGCTCGCAATT
GGACATCCTTGCTCCTGTCAAATATTGATCAGTTAGCTTGTTGAGAACAA
TTTTGTTGGGCATTGTCTTGAATTTCCTTTGTGTTTTCGACTTTGTTCAA
GACTTTTAGAAGCTAAGAATTTGATACAACTTGAGTGATTATCTTTTTTT
TTTTCCCCACTTAAAACTGATGGTTGTAGAATGATTTCGTTATATTTCTA
GATATACTGGGTGGTGTTTNAAAGGAAAAAAAAAAAAAAAAA
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