FC877899

Overview
NameFC877899
Unique NameFC877899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877899_ssr37 microsatellite FC877899_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7906 contig Ccv1_Contig7906:95..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 1
Query:   94 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 510
            V+DA   +LGRLAS VAK+LL+G +++  V  E+  +SG       +Y R  R+R +T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + I DA   +RL    KY  LG ++ ++G
Sbjct:    3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY-RETRERGSTE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMG 137          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11
Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = 1
Query:   94 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQK-GHK-YCLLGRLASEVGW 513
            V+DA + +LGRLAS+VAK +L G+++  +  E+  ++G   ++      +L+K     P  GP + R P  IF R VRGM+P KT            Y G P   ++    + P+ +    + + GH  Y  LG L+ E+G+
Sbjct:   17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAEADMSRLGHLWYVTLGELSEELGY 153          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   94 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 510
            V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      +   I DA   +RL   +KY  LG ++ ++G
Sbjct:    3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMG 137          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 48/142 (33.80%), Postives = 71/142 (50.00%), Query Frame = 1
Query:   94 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 519
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RTVRGM+P KT            Y GVP  ++  +   I +A  + RL    KY  +G +A  +G  +
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPRRGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEA-HMSRLAT-PKYVTVGEVAKFLGGKF 142          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = 1
Query:   94 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 519
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RT+RGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G +A  +G  +
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142          
BLAST of FC877899 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = 1
Query:   94 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 519
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P  GP + +   +I  RT+RGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G +A  +G  +
Sbjct:    3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142          
The following BLAST results are available for this feature:
BLAST of FC877899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL13_METBF1.486e-1135.0050S ribosomal protein L13P OS=Methanosarcina barke... [more]
RL13_METKA1.941e-1131.6950S ribosomal protein L13P OS=Methanopyrus kandler... [more]
RL13_METMA3.311e-1135.7150S ribosomal protein L13P OS=Methanosarcina mazei... [more]
RL13_PYRKO4.324e-1133.8050S ribosomal protein L13P OS=Pyrococcus kodakarae... [more]
RL13_PYRFU9.632e-1133.1050S ribosomal protein L13P OS=Pyrococcus furiosus ... [more]
RL13_PYRAB9.632e-1133.1050S ribosomal protein L13P OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877899 ID=FC877899; Name=FC877899; organism=Citrus clementina; type=EST; length=892bp
AGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAGAGAGAGGAAC
CCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGAGTGGTGGTGG
ACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGTGGCCAAGGAG
CTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAGAGATTTGCAT
GTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGGTTCCTTCGCA
AGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTTCCGCGCCCCT
GCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGCATAAGACCAA
GCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAAGGGGTCCCTG
CACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGCTCTCAAGGTT
TTGAGGCTTCAGAAGGGTCACAAGTACTGCTTGTTAGGTCGCCTGGCATC
TGAGGTTGGATGGAATTATTATGACACCATCAGGGAGCTTGAGAAGAAGA
GAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAAGAAGCAGCTCAACAAA
CTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGAAACTTGGCTCGCAATT
GGACATCCTTGCTCCTGTCAAATATTGATCAGTTAGCTTGTTGAGAACAA
TTTTGTTGGGCATTGTCTTGAATTTCCTTTGTGTTTTCGACTTTGTTCAA
GACTTTTAGAAGCTAAGAATTTGATACAACTTGAGTGATTATCTTTTTTT
TTTTCCCCACTTAAAACTGATGGTTGTAGAATGATTTCGTTATATTTCTA
GATATACTGGGTGGTGTTTNAAAGGAAAAAAAAAAAAAAAAA
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