FC877902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METLZ (Replication factor C small subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.008e-37 Identity = 63/161 (39.13%), Postives = 94/161 (58.39%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 F ELNASDERGI VVR+++K FA RT P G +K++ LDEAD++T AQAAL F L CNY S+II PI SRC+ +RF+PL+ E + + + I EG+ + G+ + + GD+R+A+ A+Q + +T + ++ +T Sbjct: 72 FRELNASDERGIDVVRNQIKQFA-----RTAPLGDAT--FKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSL-GDMRKAINALQGAAIVSDHVTAENIYAIT 224 HSP 2 Score: 68.5514 bits (166), Expect = 1.008e-37 Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRPK + ++V Q +VV+ LR +A LPHLLF G G GKT+ +A AR++FGD Sbjct: 8 WIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGD 66
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_HALMA (Replication factor C small subunit OS=Haloarcula marismortui GN=rfcS PE=3 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 1.313e-37 Identity = 59/143 (41.26%), Postives = 85/143 (59.44%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 FLELNASDERGI VVRD++K FA+ + Y+++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ FRF PL+ + V + ++ I A E +++ L+ V GD+R+A+ +Q Sbjct: 80 FLELNASDERGIDVVRDRIKNFARTSFGGVE--------YRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDG-LDALVYAADGDMRKAINGLQ 213 HSP 2 Score: 69.707 bits (169), Expect = 1.313e-37 Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W+EKYRP+T+DD++ +V L+ ++ DL H+LF GP GTGKT+ A AR+L+GD R+ Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDWRE 78
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_HALSA (Replication factor C small subunit OS=Halobacterium salinarium GN=rfcS PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.228e-37 Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 3 Query: 414 ETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 + FLELNASDERGI VVRD++K FA+ + Y+++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ FRF L + V L+EI +EG++ + ++ V GD+RRA+ A+Q + + ++ +T Sbjct: 73 QDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLE-HTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAIT 227 HSP 2 Score: 68.5514 bits (166), Expect = 2.228e-37 Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+ ++D+V ++ + L+ + DLPHLLF GP GTGKT++ ++ A++L+GD +D Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDWQD 74
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_HALS3 (Replication factor C small subunit OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.228e-37 Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 3 Query: 414 ETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 + FLELNASDERGI VVRD++K FA+ + Y+++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ FRF L + V L+EI +EG++ + ++ V GD+RRA+ A+Q + + ++ +T Sbjct: 73 QDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLE-HTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAIT 227 HSP 2 Score: 68.5514 bits (166), Expect = 2.228e-37 Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+ ++D+V ++ + L+ + DLPHLLF GP GTGKT++ ++ A++L+GD +D Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDWQD 74
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METAC (Replication factor C small subunit OS=Methanosarcina acetivorans GN=rfcS PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.922e-37 Identity = 61/143 (42.66%), Postives = 87/143 (60.84%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 F ELNASDERGI +VR+K+K FA +T P G P+K++ LDEAD++T AQ+AL F L CNY S+II PI SRC+ +RF+ LS E + +RL+ I +G+ + G E + GD+R+A+ ++Q Sbjct: 80 FTELNASDERGIDIVRNKIKNFA-----KTAPIGGA--PFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITEGG-YEALIYVAQGDMRKAVNSLQ 214 HSP 2 Score: 67.781 bits (164), Expect = 4.922e-37 Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRP ++ + Q E ++ L+ +A +LPHLLF GPPG GKT++ ++ AR++FG+ Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 73
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METBF (Replication factor C small subunit OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 5.318e-36 Identity = 63/143 (44.06%), Postives = 84/143 (58.74%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 F ELNASDERGI VVR K+K FA +T P G +K++ LDEAD++T+ AQ+AL F L CNY SRII PI SRC+ FRF+ LS E + KRL+ I + + + E V GD+R+A+ ++Q Sbjct: 76 FTELNASDERGIDVVRTKIKNFA-----KTAPMGGA--EFKIIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSITEDG-YEALVYVSQGDMRKAVNSLQ 210 HSP 2 Score: 69.3218 bits (168), Expect = 5.318e-36 Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRP +D + Q E ++ L+ +A +LPHLLF GPPG GKT++ ++ AR++FG+ Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 69
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_THEVO (Replication factor C small subunit OS=Thermoplasma volcanium GN=rfcS PE=3 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 1.176e-35 Identity = 64/169 (37.87%), Postives = 95/169 (56.21%), Query Frame = 3 Query: 408 SAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPP--YKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908 S + F+E+NAS+E GI V+R+K+K A++ RP P +K++ LDEAD +T AQAAL F CNY S+IIPPI SR RF+P+ E + K+L EI +EG + S +E V+ GGD+R+A+ +Q G+I+ ++E+ G Sbjct: 64 SWKENFIEMNASNENGIDVIRNKIKDIARI---------RPSNPLGFKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDES-MEAMVEVSGGDMRKAINVLQAVY-TSGEISPKKIYEIIG 221 HSP 2 Score: 63.5438 bits (153), Expect = 1.176e-35 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRPK++ +I + E +Q L+ + +LPHLLF G GTGKTS +A A +LFG+ Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGE 63
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METMA (Replication factor C small subunit OS=Methanosarcina mazei GN=rfcS PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.531e-35 Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 F ELNASDERGI +VR+K+K FA +T P G P+K++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ +RF+ LS + + +RL+ I + + + G E + GD+R+A+ ++Q Sbjct: 80 FTELNASDERGIDIVRNKIKNFA-----KTAPMGGA--PFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITDGG-YEALIYVAQGDMRKAVNSLQ 214 HSP 2 Score: 66.2402 bits (160), Expect = 1.531e-35 Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRP ++ + Q E ++ L +A +LPHLLF GPPG GKT++ ++ AR++FG+ Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 73
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS3_MIMIV (Putative replication factor C small subunit L499 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.650e-34 Identity = 62/162 (38.27%), Postives = 86/162 (53.09%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLY-GQITLDGLFEVTG 908 LELNAS+ERGI+ VR K+K F S P G +KLVILDE DSMT AQ L FCLICN + +I + SRC+ FRF PL+ ++ RL +IC EGV + + GD+R A+ +Q + G I + +++++G Sbjct: 84 LELNASNERGIETVRTKIKNFVSSKSSIFLPMGVR-DIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVKY-EKEAINSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKISG 243 HSP 2 Score: 67.781 bits (164), Expect = 3.650e-34 Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403 WVEKYRP+ ID I+ +++ L++ + LPHLLF+GP G+GKTS I AR+++G Sbjct: 19 WVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYG 76
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_DROME (Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.652e-34 Identity = 73/168 (43.45%), Postives = 94/168 (55.95%), Query Frame = 3 Query: 399 LETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L S + LELNAS+ERGI VVR+K+K FAQ V T P GR +K+VILDEADSMT AQ AL F L CN +II PI SRC+ RF LS V+ +L E+ E ++ LE V T GD+R+ L +Q + +G IT + +F+V Sbjct: 74 LGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKV--TLPRGR----HKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDG-LEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKV 234 HSP 2 Score: 54.299 bits (129), Expect = 3.652e-34 Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRV 424 W+EKYRP +IV + V L G+ P+++ GPPG GKT+ I AR L GD ++ V Sbjct: 18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAV 82 The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bpback to top |