FC877902

Overview
NameFC877902
Unique NameFC877902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2318 contig Ccv1_Contig2318:1..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METLZ (Replication factor C small subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.008e-37
Identity = 63/161 (39.13%), Postives = 94/161 (58.39%), Query Frame = 3
Query:  423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905
            F ELNASDERGI VVR+++K FA     RT P G     +K++ LDEAD++T  AQAAL            F L CNY S+II PI SRC+ +RF+PL+ E + + +  I   EG+ +  G+ +     +  GD+R+A+ A+Q    +   +T + ++ +T
Sbjct:   72 FRELNASDERGIDVVRNQIKQFA-----RTAPLGDAT--FKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSL-GDMRKAINALQGAAIVSDHVTAENIYAIT 224          

HSP 2 Score: 68.5514 bits (166), Expect = 1.008e-37
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406
            W+EKYRPK + ++V Q +VV+ LR  +A   LPHLLF G  G GKT+  +A AR++FGD
Sbjct:    8 WIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGD 66          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_HALMA (Replication factor C small subunit OS=Haloarcula marismortui GN=rfcS PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.313e-37
Identity = 59/143 (41.26%), Postives = 85/143 (59.44%), Query Frame = 3
Query:  423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            FLELNASDERGI VVRD++K FA+ +             Y+++ LDEAD++T+ AQ+AL            F L CNY S+II PI SRC+ FRF PL+ + V + ++ I A E +++     L+  V    GD+R+A+  +Q
Sbjct:   80 FLELNASDERGIDVVRDRIKNFARTSFGGVE--------YRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDG-LDALVYAADGDMRKAINGLQ 213          

HSP 2 Score: 69.707 bits (169), Expect = 1.313e-37
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418
            W+EKYRP+T+DD++    +V  L+  ++  DL H+LF GP GTGKT+   A AR+L+GD  R+
Sbjct:   16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDWRE 78          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_HALSA (Replication factor C small subunit OS=Halobacterium salinarium GN=rfcS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.228e-37
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  414 ETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905
            +  FLELNASDERGI VVRD++K FA+ +             Y+++ LDEAD++T+ AQ+AL            F L CNY S+II PI SRC+ FRF  L  + V   L+EI  +EG++  +   ++  V    GD+RRA+ A+Q        +  + ++ +T
Sbjct:   73 QDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLE-HTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAIT 227          

HSP 2 Score: 68.5514 bits (166), Expect = 2.228e-37
Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418
            WVEKYRP+ ++D+V   ++ + L+  +   DLPHLLF GP GTGKT++ ++ A++L+GD  +D
Sbjct:   12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDWQD 74          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_HALS3 (Replication factor C small subunit OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.228e-37
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  414 ETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905
            +  FLELNASDERGI VVRD++K FA+ +             Y+++ LDEAD++T+ AQ+AL            F L CNY S+II PI SRC+ FRF  L  + V   L+EI  +EG++  +   ++  V    GD+RRA+ A+Q        +  + ++ +T
Sbjct:   73 QDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLE-HTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAIT 227          

HSP 2 Score: 68.5514 bits (166), Expect = 2.228e-37
Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418
            WVEKYRP+ ++D+V   ++ + L+  +   DLPHLLF GP GTGKT++ ++ A++L+GD  +D
Sbjct:   12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDWQD 74          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METAC (Replication factor C small subunit OS=Methanosarcina acetivorans GN=rfcS PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.922e-37
Identity = 61/143 (42.66%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            F ELNASDERGI +VR+K+K FA     +T P G    P+K++ LDEAD++T  AQ+AL            F L CNY S+II PI SRC+ +RF+ LS E + +RL+ I   +G+ +  G   E  +    GD+R+A+ ++Q
Sbjct:   80 FTELNASDERGIDIVRNKIKNFA-----KTAPIGGA--PFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITEGG-YEALIYVAQGDMRKAVNSLQ 214          

HSP 2 Score: 67.781 bits (164), Expect = 4.922e-37
Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406
            W+EKYRP  ++ +  Q E ++ L+  +A  +LPHLLF GPPG GKT++ ++ AR++FG+
Sbjct:   15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 73          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METBF (Replication factor C small subunit OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.318e-36
Identity = 63/143 (44.06%), Postives = 84/143 (58.74%), Query Frame = 3
Query:  423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            F ELNASDERGI VVR K+K FA     +T P G     +K++ LDEAD++T+ AQ+AL            F L CNY SRII PI SRC+ FRF+ LS E + KRL+ I   + + +      E  V    GD+R+A+ ++Q
Sbjct:   76 FTELNASDERGIDVVRTKIKNFA-----KTAPMGGA--EFKIIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSITEDG-YEALVYVSQGDMRKAVNSLQ 210          

HSP 2 Score: 69.3218 bits (168), Expect = 5.318e-36
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406
            W+EKYRP  +D +  Q E ++ L+  +A  +LPHLLF GPPG GKT++ ++ AR++FG+
Sbjct:   11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 69          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_THEVO (Replication factor C small subunit OS=Thermoplasma volcanium GN=rfcS PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.176e-35
Identity = 64/169 (37.87%), Postives = 95/169 (56.21%), Query Frame = 3
Query:  408 SAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPP--YKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908
            S +  F+E+NAS+E GI V+R+K+K  A++         RP  P  +K++ LDEAD +T  AQAAL            F   CNY S+IIPPI SR    RF+P+  E + K+L EI  +EG  +   S +E  V+  GGD+R+A+  +Q      G+I+   ++E+ G
Sbjct:   64 SWKENFIEMNASNENGIDVIRNKIKDIARI---------RPSNPLGFKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDES-MEAMVEVSGGDMRKAINVLQAVY-TSGEISPKKIYEIIG 221          

HSP 2 Score: 63.5438 bits (153), Expect = 1.176e-35
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406
            W EKYRPK++ +I  + E +Q L+  +   +LPHLLF G  GTGKTS  +A A +LFG+
Sbjct:    5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGE 63          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METMA (Replication factor C small subunit OS=Methanosarcina mazei GN=rfcS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.531e-35
Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            F ELNASDERGI +VR+K+K FA     +T P G    P+K++ LDEAD++T+ AQ+AL            F L CNY S+II PI SRC+ +RF+ LS + + +RL+ I   + + +  G   E  +    GD+R+A+ ++Q
Sbjct:   80 FTELNASDERGIDIVRNKIKNFA-----KTAPMGGA--PFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITDGG-YEALIYVAQGDMRKAVNSLQ 214          

HSP 2 Score: 66.2402 bits (160), Expect = 1.531e-35
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406
            W+EKYRP  ++ +  Q E ++ L   +A  +LPHLLF GPPG GKT++ ++ AR++FG+
Sbjct:   15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 73          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS3_MIMIV (Putative replication factor C small subunit L499 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.650e-34
Identity = 62/162 (38.27%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLY-GQITLDGLFEVTG 908
            LELNAS+ERGI+ VR K+K F     S   P G     +KLVILDE DSMT  AQ  L            FCLICN + +I   + SRC+ FRF PL+  ++  RL +IC  EGV       +   +    GD+R A+  +Q    +  G I  + +++++G
Sbjct:   84 LELNASNERGIETVRTKIKNFVSSKSSIFLPMGVR-DIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVKY-EKEAINSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKISG 243          

HSP 2 Score: 67.781 bits (164), Expect = 3.650e-34
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403
            WVEKYRP+ ID I+   +++  L++ +    LPHLLF+GP G+GKTS I   AR+++G
Sbjct:   19 WVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYG 76          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_DROME (Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.652e-34
Identity = 73/168 (43.45%), Postives = 94/168 (55.95%), Query Frame = 3
Query:  399 LETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L  S +   LELNAS+ERGI VVR+K+K FAQ  V  T P GR    +K+VILDEADSMT  AQ AL            F L CN   +II PI SRC+  RF  LS   V+ +L E+   E ++      LE  V T  GD+R+ L  +Q   + +G IT + +F+V
Sbjct:   74 LGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKV--TLPRGR----HKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDG-LEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKV 234          

HSP 2 Score: 54.299 bits (129), Expect = 3.652e-34
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRV 424
            W+EKYRP    +IV   + V  L      G+ P+++  GPPG GKT+ I   AR L GD  ++ V
Sbjct:   18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAV 82          
The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RFCS_METLZ1.008e-3739.13Replication factor C small subunit OS=Methanocorpu... [more]
RFCS_HALMA1.313e-3741.26Replication factor C small subunit OS=Haloarcula m... [more]
RFCS_HALSA2.228e-3737.80Replication factor C small subunit OS=Halobacteriu... [more]
RFCS_HALS32.228e-3737.80Replication factor C small subunit OS=Halobacteriu... [more]
RFCS_METAC4.922e-3742.66Replication factor C small subunit OS=Methanosarci... [more]
RFCS_METBF5.318e-3644.06Replication factor C small subunit OS=Methanosarci... [more]
RFCS_THEVO1.176e-3537.87Replication factor C small subunit OS=Thermoplasma... [more]
RFCS_METMA1.531e-3541.26Replication factor C small subunit OS=Methanosarci... [more]
RFCS3_MIMIV3.650e-3438.27Putative replication factor C small subunit L499 O... [more]
RFC2_DROME3.652e-3443.45Replication factor C subunit 2 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bp
CTGTCAGAAACTGGCGGGTAAAAAATGTACAAAGCAGGCAGCCAGATCTT
ATAAGTCAACAAAATAAATACAAAACAGATGAATAAAAGCTAACTAAAAT
AGCTTGTTATTTAGTTACCTAAAAGCTTTAATAATGCAGGCATTCCTTAA
AACGGGTAAGATATCCAACAATGAAAAACCAGCATCATCAGTTCCGAAAA
CTGGCGGCAAGAAGAAACCACCGGCACCATGGGTAGAGAAATACCGTCCC
AAGACTATAGACGATATAGTAGACCAAGGTGAAGTAGTGCAAGTATTGCG
GGAATGTTTGGCGGGTGGTGACTTGCCGCATCTTCTGTTCTACGGGCCTC
CGGGTACTGGTAAAACTAGTGCTATCCTGGCGGCTGCTCGGCAACTATTT
GGAGACATCAGCAGAGACCGGGTTTTTGGAGCTCAATGCTTCTGATGAAC
GGGGCATACAAGTAGTCAGGGATAAAGTGAAGACATTTGCACAGCTCACA
GTCAGCAGGACACGACCTGATGGCCGACCATGTCCTCCGTATAAGCTGGT
TATTCTGGATGAAGCTGACTCCATGACCAACGCAGCCCAGGCGGCACTGC
GACGTACCATGGAGAAGGAAACCAGGACCACGAGATTCTGTTTAATCTGC
AACTATGTGTCAAGGATCATCCCGCCTATTACTAGCAGATGTTCCAAGTT
TAGATTCAAACCACTTTCAAGAGAAAATGTTATTAAAAGGTTAAAAGAGA
TCTGTGCAAGCGAAGGCGTGGACGTGGGCAGTGGGTCAGTGCTGGAGCAG
GCGGTGGACACGTGCGGCGGGGACCTGCGCCGCGCGCTCACCGCCATGCA
GTGCTGCCAGAGACTCTACGGGCAGATCACTCTGGACGGACTCTTCGAGG
TGACGGGGCTGGTGCCTGACCGG
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