FC877902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_THEAC (Replication factor C small subunit OS=Thermoplasma acidophilum GN=rfcS PE=3 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.784e-33 Identity = 60/167 (35.93%), Postives = 93/167 (55.69%), Query Frame = 3 Query: 408 SAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908 S + +E+NAS+E GI V+R+K+K A++ S P G +K++ LDEAD +T AQAAL F CNY S+IIPPI SR RF+P+ E + ++L+EI +EG + S + V+ GD+R+A+ +Q G+I+ ++E+ G Sbjct: 64 SWKENMVEMNASNENGIDVIRNKIKDIARIKPSN--PLG-----FKILFLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEES-MHALVEVSAGDMRKAINVLQAVY-TSGEISPKKIYEIIG 221 HSP 2 Score: 64.3142 bits (155), Expect = 1.784e-33 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRPK++ +I + E +Q L+ + ++PHLLF G GTGKTS +A A +LFGD Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGD 63
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 6.066e-32 Identity = 85/188 (45.21%), Postives = 109/188 (57.98%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFA--QLTVSRTRP-----------------DGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYG 872 L L+ +L G L S LELNASDERGI +VR KVK FA QL+V+ T D CPP+K+++LDEADSMT AQ+AL FCL+CNYV+RII P+ SRCSKFRFK L + N ++R+ +I E V + +G V E+ V GDLR+A+T +Q RL G Sbjct: 84 LALAKQLYGPELMKSR---VLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAG-VSEELVRVADGDLRKAITFLQSAARLVG 267 HSP 2 Score: 83.9593 bits (206), Expect = 1.358e-15 Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG-DISRDRV 424 WVEKYRPKT+ ++ Q +Q+L L +LPH+LFYGPPGTGKTS ILA A+QL+G ++ + RV Sbjct: 35 WVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRV 100
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRIL (Replication factor C small subunit 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.826e-28 Identity = 82/191 (42.93%), Postives = 107/191 (56.02%), Query Frame = 3 Query: 351 RVLVKLVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDR 923 + + LVL+ L G Y + LELNASDERGI V+R++VK FA RT P G+ P+KLVILDEAD+MT+ AQ AL F L+ NY+S II PI SR RF PL +E VI RL+ I +EGV + S LE + GD+R+A+ A+Q +IT D + G+V R Sbjct: 50 KTTMALVLARELYGEYWRENT----LELNASDERGINVIRERVKEFA-----RTAPVGKA--PFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKI-SDDALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSPR 228 HSP 2 Score: 80.8777 bits (198), Expect = 1.149e-14 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W EKYRP++ D++VD EV LRE + G++PHLLFYGPPGTGKT+ L AR+L+G+ R+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRE 68
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRAE (Replication factor C small subunit 2 OS=Pyrobaculum aerophilum GN=rfcS2 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.940e-28 Identity = 82/191 (42.93%), Postives = 107/191 (56.02%), Query Frame = 3 Query: 351 RVLVKLVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDR 923 + + LVL+ L G Y + LELNASDERGI V+R++VK FA RT P G+ P+KLVILDEAD+MT+ AQ AL F L+ NYVS II PI SR RF PL +E V RL+ I +EGV V S LE + GD+RRA+ A+Q + +T + + + G+V R Sbjct: 50 KTTMALVLARELYGEYWRENT----LELNASDERGINVIRERVKEFA-----RTAPVGKA--PFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKV-SDDALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSPR 228 HSP 2 Score: 79.337 bits (194), Expect = 3.344e-14 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W EKYRP++ D++VD EV LR+ + G++PHLLFYGPPGTGKT+ L AR+L+G+ R+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRE 68
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METMJ (Replication factor C small subunit OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 9.064e-28 Identity = 77/188 (40.96%), Postives = 107/188 (56.91%), Query Frame = 3 Query: 342 TGLRVLVKLVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 TG + K + L + S +T F E+NASDERGI VVR+++K FA RT P +K++ LDEAD++T AQAAL F L CNY S+II PI SRC+ +RF+PL RE VI+ + I A+EG+ V G+ L+ V GD+R+A+ A+Q L I + +FE+T Sbjct: 45 TGSAGIGKTTAAVALAREFFGDSWQTNFREMNASDERGIDVVRNQIKEFA-----RTSPLAGAT--FKILFLDEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTEGA-LDAIVYVASGDMRKAINALQGAAILRTDIDEETIFEIT 224 HSP 2 Score: 68.5514 bits (166), Expect = 5.903e-11 Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRP+ +D++V Q ++V L+ + G+LPHLLF G G GKT+A +A AR+ FGD Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGD 66
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS2_PYRAR (Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 9.064e-28 Identity = 81/191 (42.41%), Postives = 107/191 (56.02%), Query Frame = 3 Query: 351 RVLVKLVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDR 923 + + LVL+ L G Y + LELNASDERGI V+R++VK FA RT P G+ P+KLVILDEAD+MT+ AQ AL F L+ NY+S II PI SR RF PL +E V RL+ I +EGV + S LE + GD+RRA+ A+Q +IT + + + G+V R Sbjct: 50 KTTMALVLARELYGEYWRENT----LELNASDERGINVIRERVKEFA-----RTAPVGKA--PFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKI-SDDALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSPR 228 HSP 2 Score: 82.8037 bits (203), Expect = 3.024e-15 Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W EKYRP++ D++VD EV LRE + GG++PHLLFYGPPGTGKT+ L AR+L+G+ R+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRE 68
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRIL (Replication factor C small subunit 1 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 9.064e-28 Identity = 76/167 (45.51%), Postives = 101/167 (60.48%), Query Frame = 3 Query: 351 RVLVKLVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 + + LVL+ L G Y + LELNASDERGI V+R++VK FA RT P G+ P+KLVILDEAD+MT+ AQ AL F L+ NYVSRII PI SRC+ FRF P+ R + +RLK I SEGV+V ++ + + GD+R+A+ +Q Sbjct: 50 KTTMALVLARELYGEYWRENT----LELNASDERGINVIRERVKEFA-----RTAPVGKA--PFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGVEVKEDAI-DLIYELSEGDMRKAINILQ 204 HSP 2 Score: 80.8777 bits (198), Expect = 1.149e-14 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W EKYRP++ D++VD EV LRE + G++PHLLFYGPPGTGKT+ L AR+L+G+ R+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRE 68
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_PYRCJ (Replication factor C small subunit OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.184e-27 Identity = 75/167 (44.91%), Postives = 101/167 (60.48%), Query Frame = 3 Query: 351 RVLVKLVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 + + LVL+ L G Y + LELNASDERGI V+R++VK FA RT P G+ P+KLVILDEAD+MT+ AQ AL F L+ NYVSRII PI SRC+ FRF P+ R + +RL+EI SEGV++ ++ + GD+R+A+ +Q Sbjct: 50 KTTMALVLARELYGEYWRENT----LELNASDERGIGVIRERVKEFA-----RTAPVGKA--PFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARSEGVEL-KDDAIDLIYEISEGDMRKAINLLQ 204 HSP 2 Score: 79.7221 bits (195), Expect = 2.560e-14 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W EKYRP++ +++VD EV LRE + G+LPHLLFYGPPGTGKT+ L AR+L+G+ R+ Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEYWRE 68
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRAR (Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.637e-27 Identity = 73/167 (43.71%), Postives = 101/167 (60.48%), Query Frame = 3 Query: 351 RVLVKLVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 + + LVL+ L G Y + LELNASDERGI V+R++VK FA RT P G+ P+KLVILDEAD+MT+ AQ AL F L+ NYVSRII PI SRC+ FRF P+ R + +RL+ I SEG+++ ++ + + GD+R+A+ +Q Sbjct: 50 KTTMALVLARELYGEYWRENT----LELNASDERGINVIRERVKEFA-----RTAPVGKA--PFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRDDAI-DLIYEVSEGDMRKAINLLQ 204 HSP 2 Score: 82.8037 bits (203), Expect = 3.024e-15 Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W EKYRP++ D++VD EV LRE + GG++PHLLFYGPPGTGKT+ L AR+L+G+ R+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRE 68
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRAE (Replication factor C small subunit 1 OS=Pyrobaculum aerophilum GN=rfcS1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.875e-27 Identity = 74/167 (44.31%), Postives = 100/167 (59.88%), Query Frame = 3 Query: 351 RVLVKLVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 + + LVL+ L G Y + LELNASDERGI V+R++VK FA RT P G+ P+KLVILDEAD+MT+ AQ AL F L+ NYVSRII PI SRC+ FRF P+ R + +RLK I +EGV++ ++ + GD+R+A+ +Q Sbjct: 50 KTTMALVLARELYGEYWRENT----LELNASDERGINVIRERVKEFA-----RTAPVGKA--PFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELREDAI-NMIYELSEGDMRKAINLLQ 204 HSP 2 Score: 80.4925 bits (197), Expect = 1.501e-14 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W EKYRP++ D++VD EV LRE + G++PHLLFYGPPGTGKT+ L AR+L+G+ R+ Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRE 68 The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bpback to top |