FC877902

Overview
NameFC877902
Unique NameFC877902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2318 contig Ccv1_Contig2318:1..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC4_SCHPO (Replication factor C subunit 4 OS=Schizosaccharomyces pombe GN=rfc4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.769e-23
Identity = 72/179 (40.22%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L L+  LLG     + + G LELNASDERGI VVR+++K FAQ  V    P GR    +K++ILDEADSMT  AQ AL            F L CN  ++II PI SRC+  R+  L+ + V++RL  IC +E V+  +   L   + T  GD+R+A+  +Q     +G +  + +F V
Sbjct:   72 LCLAHALLG----PAYKEGVLELNASDERGIDVVRNRIKAFAQKKV--ILPPGR----HKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNY-TDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRV 239          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC4_YEAST (Replication factor C subunit 4 OS=Saccharomyces cerevisiae GN=RFC4 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.941e-23
Identity = 71/177 (40.11%), Postives = 99/177 (55.93%), Query Frame = 3
Query:  372 LSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L+  LLG     S   G LELNASD+RGI VVR+++K FAQ  +    P G+    +K+VILDEADSMT  AQ AL            F   CN  ++II P+ SRC+  R+  LS E+V+KRL +I   E V   +   LE  + T  GD+R+A+  +Q     +G +  D +F++
Sbjct:   62 LAHELLGR----SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHL--PPGK----HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKI 227          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_CHICK (Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.147e-23
Identity = 73/179 (40.78%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L L+  LLG  L+ +     LELNAS++RGI VVR+K+K FAQ  V  T P GR    +K++ILDEADSMT+ AQ AL            F L CN   +II PI SRC+  R+  L+   ++ RL +I   E V   +   LE  + T  GD+R+AL  +Q     +G I  + +F+V
Sbjct:   92 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPY-TDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKV 259          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23
Identity = 73/179 (40.78%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L L+  LLG  L+ +     LELNAS++RGI VVR+K+K FAQ  V  T P GR    +K++ILDEADSMT+ AQ AL            F L CN   +II PI SRC+  R+  L+   V+ RL  +   E V   +   LE  + T  GD+R+AL  +Q     +G I  + +F+V
Sbjct:   82 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPY-TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKV 249          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_MOUSE (Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.779e-23
Identity = 73/179 (40.78%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L L+  LLG  L+ +     LELNAS++RGI VVR+K+K FAQ  V  T P GR    +K++ILDEADSMT+ AQ AL            F L CN   +II PI SRC+  R+  L+   V+ RL  +   E V   +   LE  + T  GD+R+AL  +Q     +G I  + +F+V
Sbjct:   82 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPY-TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKV 249          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.498e-22
Identity = 72/179 (40.22%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L L+  LLG  L+ +     LELNAS++RGI VVR+K+K FAQ  V  T P GR    +K++ILDEADSMT+ AQ AL            F L CN   +II PI SRC+  R+  L+   ++ RL  +   E V   +   LE  + T  GD+R+AL  +Q     +G I  + +F+V
Sbjct:   85 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQY-TDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKV 252          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_HUMAN (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22
Identity = 72/179 (40.22%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L L+  LLG  L+ +     LELNAS++RGI VVR+K+K FAQ  V  T P GR    +K++ILDEADSMT+ AQ AL            F L CN   +II PI SRC+  R+  L+   ++ RL  +   E V   +   LE  + T  GD+R+AL  +Q     +G I  + +F+V
Sbjct:   87 LCLARALLGPALKDA----MLELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPY-TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKV 254          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_DICDI (Probable replication factor C subunit 2 OS=Dictyostelium discoideum GN=rfc2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.824e-21
Identity = 71/180 (39.44%), Postives = 96/180 (53.33%), Query Frame = 3
Query:  366 LVLSWRLLG-NYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L L+  LLG NY E        ELNASD+R + VVRDK+K+FA   V  T P GR    +K++ILDE DSMT+ AQ AL            F   CN  ++II PI SRC+  RF  LS   ++ RL+E+   E V   +   L   + T  GD+R+AL  +Q     +G I  + + +V
Sbjct:   71 LCLARALLGANYKEA-----VYELNASDDRTLDVVRDKIKSFAMKKV--TLPAGR----HKIIILDEVDSMTSGAQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPY-TDDGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKV 238          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.194e-21
Identity = 49/156 (31.41%), Postives = 72/156 (46.15%), Query Frame = 3
Query:  399 LETSAETGFLELNASDERGIQ--VVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQ 860
            + T A    LE+N SD       V+++ +KT AQ     T         +K+V+L E D +T  AQ AL              L CN  S++IPPI SRC   R    S E++   L  +C  EG+++ S      A  +C  +LR+AL   + C+
Sbjct:   84 ISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQR----DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSC-RNLRKALLMCEACR 234          

HSP 2 Score: 54.6842 bits (130), Expect = 3.194e-21
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403
            WV+KYRP ++  +    E    LR  +  GD PHLL YGP G GK + I+   R+L+G
Sbjct:    4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.194e-21
Identity = 49/156 (31.41%), Postives = 71/156 (45.51%), Query Frame = 3
Query:  399 LETSAETGFLELNASDERGIQ--VVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQ 860
            + T A    LE+N SD       V+++ +KT AQ     T         +K+V+L E D +T  AQ AL              L CN  S++IPPI SRC   R    S E++   L  +C  EG+ + S      A  +C  +LR+AL   + C+
Sbjct:   84 ISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQR----DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSC-RNLRKALLMCEACR 234          

HSP 2 Score: 55.4546 bits (132), Expect = 3.194e-21
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403
            WV+KYRP ++  +    E    LR  +  GD PHLL YGP G GK + I+   R+L+G
Sbjct:    4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61          
The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RFC4_SCHPO1.769e-2340.22Replication factor C subunit 4 OS=Schizosaccharomy... [more]
RFC4_YEAST3.941e-2340.11Replication factor C subunit 4 OS=Saccharomyces ce... [more]
RFC2_CHICK5.147e-2340.78Replication factor C subunit 2 OS=Gallus gallus GN... [more]
RFC2_RAT6.722e-2340.78Replication factor C subunit 2 OS=Rattus norvegicu... [more]
RFC2_MOUSE8.779e-2340.78Replication factor C subunit 2 OS=Mus musculus GN=... [more]
RFC2_BOVIN1.498e-2240.22Replication factor C subunit 2 OS=Bos taurus GN=RF... [more]
RFC2_HUMAN1.956e-2240.22Replication factor C subunit 2 OS=Homo sapiens GN=... [more]
RFC2_DICDI2.824e-2139.44Probable replication factor C subunit 2 OS=Dictyos... [more]
RFC3_HUMAN3.194e-2131.41Replication factor C subunit 3 OS=Homo sapiens GN=... [more]
RFC3_MOUSE3.194e-2131.41Replication factor C subunit 3 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bp
CTGTCAGAAACTGGCGGGTAAAAAATGTACAAAGCAGGCAGCCAGATCTT
ATAAGTCAACAAAATAAATACAAAACAGATGAATAAAAGCTAACTAAAAT
AGCTTGTTATTTAGTTACCTAAAAGCTTTAATAATGCAGGCATTCCTTAA
AACGGGTAAGATATCCAACAATGAAAAACCAGCATCATCAGTTCCGAAAA
CTGGCGGCAAGAAGAAACCACCGGCACCATGGGTAGAGAAATACCGTCCC
AAGACTATAGACGATATAGTAGACCAAGGTGAAGTAGTGCAAGTATTGCG
GGAATGTTTGGCGGGTGGTGACTTGCCGCATCTTCTGTTCTACGGGCCTC
CGGGTACTGGTAAAACTAGTGCTATCCTGGCGGCTGCTCGGCAACTATTT
GGAGACATCAGCAGAGACCGGGTTTTTGGAGCTCAATGCTTCTGATGAAC
GGGGCATACAAGTAGTCAGGGATAAAGTGAAGACATTTGCACAGCTCACA
GTCAGCAGGACACGACCTGATGGCCGACCATGTCCTCCGTATAAGCTGGT
TATTCTGGATGAAGCTGACTCCATGACCAACGCAGCCCAGGCGGCACTGC
GACGTACCATGGAGAAGGAAACCAGGACCACGAGATTCTGTTTAATCTGC
AACTATGTGTCAAGGATCATCCCGCCTATTACTAGCAGATGTTCCAAGTT
TAGATTCAAACCACTTTCAAGAGAAAATGTTATTAAAAGGTTAAAAGAGA
TCTGTGCAAGCGAAGGCGTGGACGTGGGCAGTGGGTCAGTGCTGGAGCAG
GCGGTGGACACGTGCGGCGGGGACCTGCGCCGCGCGCTCACCGCCATGCA
GTGCTGCCAGAGACTCTACGGGCAGATCACTCTGGACGGACTCTTCGAGG
TGACGGGGCTGGTGCCTGACCGG
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