FC877902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC4_SCHPO (Replication factor C subunit 4 OS=Schizosaccharomyces pombe GN=rfc4 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.769e-23 Identity = 72/179 (40.22%), Postives = 101/179 (56.42%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L L+ LLG + + G LELNASDERGI VVR+++K FAQ V P GR +K++ILDEADSMT AQ AL F L CN ++II PI SRC+ R+ L+ + V++RL IC +E V+ + L + T GD+R+A+ +Q +G + + +F V Sbjct: 72 LCLAHALLG----PAYKEGVLELNASDERGIDVVRNRIKAFAQKKV--ILPPGR----HKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNY-TDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRV 239
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC4_YEAST (Replication factor C subunit 4 OS=Saccharomyces cerevisiae GN=RFC4 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.941e-23 Identity = 71/177 (40.11%), Postives = 99/177 (55.93%), Query Frame = 3 Query: 372 LSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L+ LLG S G LELNASD+RGI VVR+++K FAQ + P G+ +K+VILDEADSMT AQ AL F CN ++II P+ SRC+ R+ LS E+V+KRL +I E V + LE + T GD+R+A+ +Q +G + D +F++ Sbjct: 62 LAHELLGR----SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHL--PPGK----HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKI 227
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_CHICK (Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.147e-23 Identity = 73/179 (40.78%), Postives = 100/179 (55.87%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L L+ LLG L+ + LELNAS++RGI VVR+K+K FAQ V T P GR +K++ILDEADSMT+ AQ AL F L CN +II PI SRC+ R+ L+ ++ RL +I E V + LE + T GD+R+AL +Q +G I + +F+V Sbjct: 92 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPY-TDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKV 259
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23 Identity = 73/179 (40.78%), Postives = 99/179 (55.31%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L L+ LLG L+ + LELNAS++RGI VVR+K+K FAQ V T P GR +K++ILDEADSMT+ AQ AL F L CN +II PI SRC+ R+ L+ V+ RL + E V + LE + T GD+R+AL +Q +G I + +F+V Sbjct: 82 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPY-TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKV 249
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_MOUSE (Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 8.779e-23 Identity = 73/179 (40.78%), Postives = 99/179 (55.31%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L L+ LLG L+ + LELNAS++RGI VVR+K+K FAQ V T P GR +K++ILDEADSMT+ AQ AL F L CN +II PI SRC+ R+ L+ V+ RL + E V + LE + T GD+R+AL +Q +G I + +F+V Sbjct: 82 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPY-TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKV 249
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.498e-22 Identity = 72/179 (40.22%), Postives = 99/179 (55.31%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L L+ LLG L+ + LELNAS++RGI VVR+K+K FAQ V T P GR +K++ILDEADSMT+ AQ AL F L CN +II PI SRC+ R+ L+ ++ RL + E V + LE + T GD+R+AL +Q +G I + +F+V Sbjct: 85 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQY-TDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKV 252
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_HUMAN (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 1.956e-22 Identity = 72/179 (40.22%), Postives = 99/179 (55.31%), Query Frame = 3 Query: 366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L L+ LLG L+ + LELNAS++RGI VVR+K+K FAQ V T P GR +K++ILDEADSMT+ AQ AL F L CN +II PI SRC+ R+ L+ ++ RL + E V + LE + T GD+R+AL +Q +G I + +F+V Sbjct: 87 LCLARALLGPALKDA----MLELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPY-TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKV 254
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC2_DICDI (Probable replication factor C subunit 2 OS=Dictyostelium discoideum GN=rfc2 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.824e-21 Identity = 71/180 (39.44%), Postives = 96/180 (53.33%), Query Frame = 3 Query: 366 LVLSWRLLG-NYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902 L L+ LLG NY E ELNASD+R + VVRDK+K+FA V T P GR +K++ILDE DSMT+ AQ AL F CN ++II PI SRC+ RF LS ++ RL+E+ E V + L + T GD+R+AL +Q +G I + + +V Sbjct: 71 LCLARALLGANYKEA-----VYELNASDDRTLDVVRDKIKSFAMKKV--TLPAGR----HKIIILDEVDSMTSGAQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPY-TDDGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKV 238
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.194e-21 Identity = 49/156 (31.41%), Postives = 72/156 (46.15%), Query Frame = 3 Query: 399 LETSAETGFLELNASDERGIQ--VVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQ 860 + T A LE+N SD V+++ +KT AQ T +K+V+L E D +T AQ AL L CN S++IPPI SRC R S E++ L +C EG+++ S A +C +LR+AL + C+ Sbjct: 84 ISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQR----DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSC-RNLRKALLMCEACR 234 HSP 2 Score: 54.6842 bits (130), Expect = 3.194e-21 Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403 WV+KYRP ++ + E LR + GD PHLL YGP G GK + I+ R+L+G Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.194e-21 Identity = 49/156 (31.41%), Postives = 71/156 (45.51%), Query Frame = 3 Query: 399 LETSAETGFLELNASDERGIQ--VVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQ 860 + T A LE+N SD V+++ +KT AQ T +K+V+L E D +T AQ AL L CN S++IPPI SRC R S E++ L +C EG+ + S A +C +LR+AL + C+ Sbjct: 84 ISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQR----DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSC-RNLRKALLMCEACR 234 HSP 2 Score: 55.4546 bits (132), Expect = 3.194e-21 Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403 WV+KYRP ++ + E LR + GD PHLL YGP G GK + I+ R+L+G Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61 The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bpback to top |