FC877902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_METB6 (Replication factor C large subunit OS=Methanoregula boonei (strain 6A8) GN=rfcL PE=3 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 8.100e-14 Identity = 44/157 (28.03%), Postives = 72/157 (45.86%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQ--AALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDG 890 +ELNASD+R V+ +++ T S T KL+I+DEAD++ A A LI N + + + RC +F+ L ++ RLK IC+SE + S S + + ++ GD+R A+ + G+ +LDG Sbjct: 65 IELNASDQRTAAVI-ERIAGAGSTTASLTGS------ARKLIIMDEADNLQGTADRGGAKAILECIKNARQPIVLIANDLYGLAAELRLRCEPVQFRALPARSIAPRLKYICSSEKI-ACSESAVHEIAESAEGDMRSAVNMLYA--SAIGRQSLDG 211 HSP 2 Score: 44.2838 bits (103), Expect = 8.100e-14 Identity = 24/62 (38.71%), Postives = 33/62 (53.23%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPH--LLFYGPPGTGKTSAILAAARQLFGDI 409 W EKYRP+ + DIV V+ + + LL YG PG GKTS++ A AR + D+ Sbjct: 3 WAEKYRPEHLADIVGNTSAVRQMADWAKTWTARSKPLLLYGKPGIGKTSSVYALARDMNWDV 64
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_METAC (Replication factor C large subunit OS=Methanosarcina acetivorans GN=rfcL PE=3 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 1.359e-13 Identity = 39/145 (26.90%), Postives = 68/145 (46.90%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQL-TVSRTRPDGRPCPPYKLVILDEADSMTNAAQAA--LXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 +ELNASD+R V+ + A + T+ ++ +L+ILDEAD++ A LI N + + P I + C + +F + +++ LK++C +EGV ++L Q + GGD R A+ +Q Sbjct: 77 IELNASDQRTAGVIEKIAGSAASMNTLFGSK---------RLIILDEADNIHGTADRGGMRAISGIIKGTLQPIVLIANDIYGLTPTIRNLCLEIKFGSVQSRSMVPALKKVCGAEGVYCSQEALL-QIAENAGGDFRSAINDLQ 211 HSP 2 Score: 44.669 bits (104), Expect = 1.359e-13 Identity = 24/65 (36.92%), Postives = 36/65 (55.38%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLA--GGDLPH---LLFYGPPGTGKTSAILAAARQLFGDI 409 W EKYRP+T++D+V + V+ R +P ++ YGP G GKTS+ A AR + D+ Sbjct: 12 WAEKYRPRTLEDVVGNKKAVRDFRAWAEEWQSRIPETRAVILYGPAGIGKTSSAHALARDMDWDV 76
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_UNCMA (Replication factor C large subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcL PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 3.876e-13 Identity = 45/179 (25.14%), Postives = 85/179 (47.49%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSM----TNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITL-----------DGLFEVTGLV 914 ++ELNASD R + +++ A + + GR +LVILDEAD++ +AA+ LI N + + P+ + +F+ + +V K L+++CA+EG+ ++++ A T DLR A+ +Q + GQ+T+ + +F+V G++ Sbjct: 71 YIELNASDVRTKDAI-NRIAGPAAMAGTFEGTGGR-----RLVILDEADNLHGNYDRGGEAAIINVIRNASQPVI--LIANDMYAMSKPLRESALQIQFRAILSTSVAKVLRKVCANEGLKCDPEALMKIAERT--NDLRSAINDLQAAAQGSGQVTVADVSTGDRDVPETIFKVMGMI 239 HSP 2 Score: 47.3654 bits (111), Expect = 3.876e-13 Identity = 26/61 (42.62%), Postives = 33/61 (54.10%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLA--GGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRP ++ DIV V+ LR+ G ++ YG PG GKTSA LA A + D Sbjct: 10 WTEKYRPVSLADIVGNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALAHDMGWD 70
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_METS3 (Replication factor C large subunit OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rfcL PE=3 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 5.049e-13 Identity = 41/164 (25.00%), Postives = 72/164 (43.90%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSM--TNAAQAALXXXXXXXXXXXXFCLICN-YVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 ++ELNASD+R V++ T + + S++ YKL+ILDE D + TN LI N + S+ I + ++C + + ++ K LK+I +EG+ ++ E A + GD+R A+ Q + L + +T Sbjct: 65 YIELNASDKRSQDVIKS---TIGESSSSKSLFGD----DYKLLILDEVDGIHGTNDRGGVRAIGDIIKKAKHPMILIANDFYSKRIASLKTKCDVLKMSKVRSPSINKLLKQIAINEGIKANPAALKELAKKS-NGDMRSAINTFQALANQNEVLELSDIENIT 220 HSP 2 Score: 47.3654 bits (111), Expect = 5.049e-13 Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECL----AGGDLPHLLFYGPPGTGKTSAILAAARQ 394 W +KYRPKT+D++V + ++++ + AG LL GPPG GKT+ A AR+ Sbjct: 3 WTDKYRPKTLDEVVGNNKEKALIQKWVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIARE 61
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_METMJ (Replication factor C large subunit OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rfcL PE=3 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 1.869e-12 Identity = 38/143 (26.57%), Postives = 65/143 (45.45%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQ--AALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAM 848 +ELNASD+R + ++V T S + KL++LDEAD++ A A LI N + + + +F+ L +++ RL++ICA+EGV + L+ + GGD+R A+ + Sbjct: 65 VELNASDQR-TKAALERVAGAGSTTASLSGASR------KLILLDEADNLHGQADRGGAKAIVEIIAAAQQPIILIANDYYSLTRELKAVTEPVQFRALQARSIVPRLRQICAAEGV-ACDPAALDDIANRAGGDMRAAVNML 199 HSP 2 Score: 45.4394 bits (106), Expect = 1.869e-12 Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLA--GGDLPHLLFYGPPGTGKTSAILAAARQL 397 WVEKYRP+ + D+V V+++ E L+ YG PGTGKTS+ A A + Sbjct: 3 WVEKYRPQHLQDVVGNSGAVRLIYEWARDWSRQKKPLILYGKPGTGKTSSAYALANDM 60
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_PYRKO (Replication factor C large subunit OS=Pyrococcus kodakaraensis GN=rfcL PE=1 SV=1) HSP 1 Score: 47.3654 bits (111), Expect = 5.299e-12 Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLR---ECLAGGDLPH---LLFYGPPGTGKTSAILAAARQ 394 WVEKYRP+ + +IV+Q + ++ +R E G+ P LL GPPG GKT+ + A A + Sbjct: 6 WVEKYRPRKLSEIVNQEKALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTVYALANE 66 HSP 2 Score: 44.669 bits (104), Expect = 5.299e-12 Identity = 40/148 (27.03%), Postives = 65/148 (43.92%), Query Frame = 3 Query: 414 ETGF--LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 E GF +ELNASDER + + V+ + + R KL+ LDEAD++ + A + N+ + I ++ +K L++ ++IK L I EG++V VL + GDLR A+ +Q Sbjct: 66 EYGFEVIELNASDERTYEKIERYVQAAYTMDILGKRR--------KLIFLDEADNIEPSG--AREIAKLIDKARNPIIMSANHYWEVPREIRNKAQIVEYKRLTQRDIIKALVRILKREGLEVPK-EVLYEIAKRANGDLRAAVNDLQ 202
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_PYRAB (Replication factor C large subunit OS=Pyrococcus abyssi GN=rfcL PE=1 SV=3) HSP 1 Score: 48.521 bits (114), Expect = 6.888e-12 Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLR---ECLAGGDLPH---LLFYGPPGTGKTSAILAAARQ 394 WVEKYRP+ + +I++Q + + ++ E G+ P LL GPPG+GKT+ + A AR+ Sbjct: 6 WVEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYALARE 66 HSP 2 Score: 43.1282 bits (100), Expect = 6.888e-12 Identity = 39/142 (27.46%), Postives = 58/142 (40.85%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 +ELNASDER DK+ + Q + R K++ LDEAD++ A + N+ + I R +K L++ +VI L I EG+ V VL + GDLR A+ +Q Sbjct: 72 IELNASDER----TYDKIARYVQAAYTMDILGKR----RKIIFLDEADNI--EPSGAPEIAKLIDRARNPIIMAANHYWEVPKEIRDRAELVEYKRLTQRDVINALVRILKREGITVPK-EVLVEIAKRASGDLRAAINDLQ 202
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METJA (Replication factor C small subunit OS=Methanocaldococcus jannaschii GN=rfcS PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12 Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 3 Query: 648 CNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 CNY S+IIPPI SRC+ FRF PL +E++ K+LKEI EG+++ + S LE + GD+R+A+ +Q L I + +++V+ Sbjct: 1668 CNYPSKIIPPIQSRCAVFRFSPLKKEDIAKKLKEIAEKEGLNL-TESGLEAIIYVSEGDMRKAINVLQTAAALSDVIDDEIVYKVS 1752
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_STAMF (Replication factor C large subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcL PE=3 SV=1) HSP 1 Score: 46.595 bits (109), Expect = 1.513e-11 Identity = 41/163 (25.15%), Postives = 70/163 (42.94%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLIC---NYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 +E+NASD R Q + KT A + R K+++LDE D ++ A + ++ N + + P+ FK LS +VI LK IC E ++ + L + GDLR A+ +Q +G++TL+ + E++ Sbjct: 72 VEMNASDFRRRQDIERIAKTAAFMRSLFARG--------KIILLDEVDGISGTADRGAIDAILHLLEITRYPVVMTANNPWDQKLKPLRDASLMIAFKRLSERDVIIVLKRICQLEKLEC-EDAALREIARRSEGDLRSAINDLQAIAEGFGRVTLNWVRELS 225 HSP 2 Score: 43.8986 bits (102), Expect = 1.513e-11 Identity = 26/60 (43.33%), Postives = 33/60 (55.00%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQG----EVVQVLRECLAGGDLPHL-LFYGPPGTGKTSAILAAARQ 394 W+ KYRPK I D+V+Q + +Q L L G L YGP G GKTS + AAA + Sbjct: 7 WIIKYRPKKIADVVNQDSAKKQFIQWLESWLKGKPSKKAALLYGPAGCGKTSLVEAAANE 66
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_HALMA (Replication factor C large subunit OS=Haloarcula marismortui GN=rfcL PE=3 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 1.953e-11 Identity = 47/172 (27.33%), Postives = 73/172 (42.44%), Query Frame = 3 Query: 399 LETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQ--AALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908 L E +ELNASD R V+ A+ GR +LVI+DEAD++ A A LI N + + + C F+ +S +++ L+++C EGV+ S ++ E A GG LR A+ +Q ++T D + VTG Sbjct: 56 LANDMEWPTIELNASDSRTKDVINRVAGEAAKSGTLTAGGGGR-----RLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMSNGLRNNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGG-LRGAVKDLQAIAETTERLTADDV--VTG 219 HSP 2 Score: 38.1206 bits (87), Expect = 1.953e-11 Identity = 20/58 (34.48%), Postives = 29/58 (50.00%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGD--LPHLLFYGPPGTGKTSAILAAARQL 397 W EKYRP T+ ++ + L++ D ++ YG PG GKTSA A A + Sbjct: 3 WTEKYRPTTLSEVRGNDKARDALKKWAETWDDHREAVILYGSPGIGKTSAAHALANDM 60 The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bpback to top |