FC877902

Overview
NameFC877902
Unique NameFC877902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2318 contig Ccv1_Contig2318:1..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_METB6 (Replication factor C large subunit OS=Methanoregula boonei (strain 6A8) GN=rfcL PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 8.100e-14
Identity = 44/157 (28.03%), Postives = 72/157 (45.86%), Query Frame = 3
Query:  426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQ--AALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDG 890
            +ELNASD+R   V+ +++      T S T          KL+I+DEAD++   A    A               LI N +  +   +  RC   +F+ L   ++  RLK IC+SE +   S S + +  ++  GD+R A+  +       G+ +LDG
Sbjct:   65 IELNASDQRTAAVI-ERIAGAGSTTASLTGS------ARKLIIMDEADNLQGTADRGGAKAILECIKNARQPIVLIANDLYGLAAELRLRCEPVQFRALPARSIAPRLKYICSSEKI-ACSESAVHEIAESAEGDMRSAVNMLYA--SAIGRQSLDG 211          

HSP 2 Score: 44.2838 bits (103), Expect = 8.100e-14
Identity = 24/62 (38.71%), Postives = 33/62 (53.23%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPH--LLFYGPPGTGKTSAILAAARQLFGDI 409
            W EKYRP+ + DIV     V+ + +           LL YG PG GKTS++ A AR +  D+
Sbjct:    3 WAEKYRPEHLADIVGNTSAVRQMADWAKTWTARSKPLLLYGKPGIGKTSSVYALARDMNWDV 64          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_METAC (Replication factor C large subunit OS=Methanosarcina acetivorans GN=rfcL PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.359e-13
Identity = 39/145 (26.90%), Postives = 68/145 (46.90%), Query Frame = 3
Query:  426 LELNASDERGIQVVRDKVKTFAQL-TVSRTRPDGRPCPPYKLVILDEADSMTNAAQAA--LXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            +ELNASD+R   V+     + A + T+  ++         +L+ILDEAD++   A                    LI N +  + P I + C + +F  +   +++  LK++C +EGV     ++L Q  +  GGD R A+  +Q
Sbjct:   77 IELNASDQRTAGVIEKIAGSAASMNTLFGSK---------RLIILDEADNIHGTADRGGMRAISGIIKGTLQPIVLIANDIYGLTPTIRNLCLEIKFGSVQSRSMVPALKKVCGAEGVYCSQEALL-QIAENAGGDFRSAINDLQ 211          

HSP 2 Score: 44.669 bits (104), Expect = 1.359e-13
Identity = 24/65 (36.92%), Postives = 36/65 (55.38%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLA--GGDLPH---LLFYGPPGTGKTSAILAAARQLFGDI 409
            W EKYRP+T++D+V   + V+  R         +P    ++ YGP G GKTS+  A AR +  D+
Sbjct:   12 WAEKYRPRTLEDVVGNKKAVRDFRAWAEEWQSRIPETRAVILYGPAGIGKTSSAHALARDMDWDV 76          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_UNCMA (Replication factor C large subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcL PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 3.876e-13
Identity = 45/179 (25.14%), Postives = 85/179 (47.49%), Query Frame = 3
Query:  423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSM----TNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITL-----------DGLFEVTGLV 914
            ++ELNASD R    + +++   A +  +     GR     +LVILDEAD++        +AA+              LI N +  +  P+     + +F+ +   +V K L+++CA+EG+     ++++ A  T   DLR A+  +Q   +  GQ+T+           + +F+V G++
Sbjct:   71 YIELNASDVRTKDAI-NRIAGPAAMAGTFEGTGGR-----RLVILDEADNLHGNYDRGGEAAIINVIRNASQPVI--LIANDMYAMSKPLRESALQIQFRAILSTSVAKVLRKVCANEGLKCDPEALMKIAERT--NDLRSAINDLQAAAQGSGQVTVADVSTGDRDVPETIFKVMGMI 239          

HSP 2 Score: 47.3654 bits (111), Expect = 3.876e-13
Identity = 26/61 (42.62%), Postives = 33/61 (54.10%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLA--GGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406
            W EKYRP ++ DIV     V+ LR+     G     ++ YG PG GKTSA LA A  +  D
Sbjct:   10 WTEKYRPVSLADIVGNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALAHDMGWD 70          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_METS3 (Replication factor C large subunit OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rfcL PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 5.049e-13
Identity = 41/164 (25.00%), Postives = 72/164 (43.90%), Query Frame = 3
Query:  423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSM--TNAAQAALXXXXXXXXXXXXFCLICN-YVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905
            ++ELNASD+R   V++    T  + + S++         YKL+ILDE D +  TN                    LI N + S+ I  + ++C   +   +   ++ K LK+I  +EG+     ++ E A  +  GD+R A+   Q        + L  +  +T
Sbjct:   65 YIELNASDKRSQDVIKS---TIGESSSSKSLFGD----DYKLLILDEVDGIHGTNDRGGVRAIGDIIKKAKHPMILIANDFYSKRIASLKTKCDVLKMSKVRSPSINKLLKQIAINEGIKANPAALKELAKKS-NGDMRSAINTFQALANQNEVLELSDIENIT 220          

HSP 2 Score: 47.3654 bits (111), Expect = 5.049e-13
Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECL----AGGDLPHLLFYGPPGTGKTSAILAAARQ 394
            W +KYRPKT+D++V   +   ++++ +    AG     LL  GPPG GKT+   A AR+
Sbjct:    3 WTDKYRPKTLDEVVGNNKEKALIQKWVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIARE 61          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_METMJ (Replication factor C large subunit OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rfcL PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 1.869e-12
Identity = 38/143 (26.57%), Postives = 65/143 (45.45%), Query Frame = 3
Query:  426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQ--AALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAM 848
            +ELNASD+R  +   ++V      T S +          KL++LDEAD++   A    A               LI N    +   + +     +F+ L   +++ RL++ICA+EGV     + L+   +  GGD+R A+  +
Sbjct:   65 VELNASDQR-TKAALERVAGAGSTTASLSGASR------KLILLDEADNLHGQADRGGAKAIVEIIAAAQQPIILIANDYYSLTRELKAVTEPVQFRALQARSIVPRLRQICAAEGV-ACDPAALDDIANRAGGDMRAAVNML 199          

HSP 2 Score: 45.4394 bits (106), Expect = 1.869e-12
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLA--GGDLPHLLFYGPPGTGKTSAILAAARQL 397
            WVEKYRP+ + D+V     V+++ E           L+ YG PGTGKTS+  A A  +
Sbjct:    3 WVEKYRPQHLQDVVGNSGAVRLIYEWARDWSRQKKPLILYGKPGTGKTSSAYALANDM 60          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_PYRKO (Replication factor C large subunit OS=Pyrococcus kodakaraensis GN=rfcL PE=1 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 5.299e-12
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLR---ECLAGGDLPH---LLFYGPPGTGKTSAILAAARQ 394
            WVEKYRP+ + +IV+Q + ++ +R   E    G+ P    LL  GPPG GKT+ + A A +
Sbjct:    6 WVEKYRPRKLSEIVNQEKALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTVYALANE 66          

HSP 2 Score: 44.669 bits (104), Expect = 5.299e-12
Identity = 40/148 (27.03%), Postives = 65/148 (43.92%), Query Frame = 3
Query:  414 ETGF--LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            E GF  +ELNASDER  + +   V+    + +   R         KL+ LDEAD++  +   A               +  N+   +   I ++     +K L++ ++IK L  I   EG++V    VL +      GDLR A+  +Q
Sbjct:   66 EYGFEVIELNASDERTYEKIERYVQAAYTMDILGKRR--------KLIFLDEADNIEPSG--AREIAKLIDKARNPIIMSANHYWEVPREIRNKAQIVEYKRLTQRDIIKALVRILKREGLEVPK-EVLYEIAKRANGDLRAAVNDLQ 202          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_PYRAB (Replication factor C large subunit OS=Pyrococcus abyssi GN=rfcL PE=1 SV=3)

HSP 1 Score: 48.521 bits (114), Expect = 6.888e-12
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLR---ECLAGGDLPH---LLFYGPPGTGKTSAILAAARQ 394
            WVEKYRP+ + +I++Q + +  ++   E    G+ P    LL  GPPG+GKT+ + A AR+
Sbjct:    6 WVEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYALARE 66          

HSP 2 Score: 43.1282 bits (100), Expect = 6.888e-12
Identity = 39/142 (27.46%), Postives = 58/142 (40.85%), Query Frame = 3
Query:  426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            +ELNASDER      DK+  + Q   +      R     K++ LDEAD++      A               +  N+   +   I  R     +K L++ +VI  L  I   EG+ V    VL +      GDLR A+  +Q
Sbjct:   72 IELNASDER----TYDKIARYVQAAYTMDILGKR----RKIIFLDEADNI--EPSGAPEIAKLIDRARNPIIMAANHYWEVPKEIRDRAELVEYKRLTQRDVINALVRILKREGITVPK-EVLVEIAKRASGDLRAAINDLQ 202          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCS_METJA (Replication factor C small subunit OS=Methanocaldococcus jannaschii GN=rfcS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 3
Query:  648 CNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905
            CNY S+IIPPI SRC+ FRF PL +E++ K+LKEI   EG+++ + S LE  +    GD+R+A+  +Q    L   I  + +++V+
Sbjct: 1668 CNYPSKIIPPIQSRCAVFRFSPLKKEDIAKKLKEIAEKEGLNL-TESGLEAIIYVSEGDMRKAINVLQTAAALSDVIDDEIVYKVS 1752          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_STAMF (Replication factor C large subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcL PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.513e-11
Identity = 41/163 (25.15%), Postives = 70/163 (42.94%), Query Frame = 3
Query:  426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLIC---NYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905
            +E+NASD R  Q +    KT A +     R         K+++LDE D ++  A                + ++    N   + + P+        FK LS  +VI  LK IC  E ++    + L +      GDLR A+  +Q     +G++TL+ + E++
Sbjct:   72 VEMNASDFRRRQDIERIAKTAAFMRSLFARG--------KIILLDEVDGISGTADRGAIDAILHLLEITRYPVVMTANNPWDQKLKPLRDASLMIAFKRLSERDVIIVLKRICQLEKLEC-EDAALREIARRSEGDLRSAINDLQAIAEGFGRVTLNWVRELS 225          

HSP 2 Score: 43.8986 bits (102), Expect = 1.513e-11
Identity = 26/60 (43.33%), Postives = 33/60 (55.00%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQG----EVVQVLRECLAGGDLPHL-LFYGPPGTGKTSAILAAARQ 394
            W+ KYRPK I D+V+Q     + +Q L   L G       L YGP G GKTS + AAA +
Sbjct:    7 WIIKYRPKKIADVVNQDSAKKQFIQWLESWLKGKPSKKAALLYGPAGCGKTSLVEAAANE 66          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_HALMA (Replication factor C large subunit OS=Haloarcula marismortui GN=rfcL PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.953e-11
Identity = 47/172 (27.33%), Postives = 73/172 (42.44%), Query Frame = 3
Query:  399 LETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQ--AALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908
            L    E   +ELNASD R   V+       A+         GR     +LVI+DEAD++   A    A               LI N    +   + + C    F+ +S  +++  L+++C  EGV+  S ++ E A    GG LR A+  +Q       ++T D +  VTG
Sbjct:   56 LANDMEWPTIELNASDSRTKDVINRVAGEAAKSGTLTAGGGGR-----RLVIMDEADNIHGNADRGGARAITALVKEASQPMILIANEYYEMSNGLRNNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDALQELAEQNSGG-LRGAVKDLQAIAETTERLTADDV--VTG 219          

HSP 2 Score: 38.1206 bits (87), Expect = 1.953e-11
Identity = 20/58 (34.48%), Postives = 29/58 (50.00%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGD--LPHLLFYGPPGTGKTSAILAAARQL 397
            W EKYRP T+ ++    +    L++     D     ++ YG PG GKTSA  A A  +
Sbjct:    3 WTEKYRPTTLSEVRGNDKARDALKKWAETWDDHREAVILYGSPGIGKTSAAHALANDM 60          
The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RFCL_METB68.100e-1428.03Replication factor C large subunit OS=Methanoregul... [more]
RFCL_METAC1.359e-1326.90Replication factor C large subunit OS=Methanosarci... [more]
RFCL_UNCMA3.876e-1325.14Replication factor C large subunit OS=Uncultured m... [more]
RFCL_METS35.049e-1325.00Replication factor C large subunit OS=Methanobrevi... [more]
RFCL_METMJ1.869e-1226.57Replication factor C large subunit OS=Methanoculle... [more]
RFCL_PYRKO5.299e-1240.98Replication factor C large subunit OS=Pyrococcus k... [more]
RFCL_PYRAB6.888e-1239.34Replication factor C large subunit OS=Pyrococcus a... [more]
RFCS_METJA9.106e-1241.86Replication factor C small subunit OS=Methanocaldo... [more]
RFCL_STAMF1.513e-1125.15Replication factor C large subunit OS=Staphylother... [more]
RFCL_HALMA1.953e-1127.33Replication factor C large subunit OS=Haloarcula m... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bp
CTGTCAGAAACTGGCGGGTAAAAAATGTACAAAGCAGGCAGCCAGATCTT
ATAAGTCAACAAAATAAATACAAAACAGATGAATAAAAGCTAACTAAAAT
AGCTTGTTATTTAGTTACCTAAAAGCTTTAATAATGCAGGCATTCCTTAA
AACGGGTAAGATATCCAACAATGAAAAACCAGCATCATCAGTTCCGAAAA
CTGGCGGCAAGAAGAAACCACCGGCACCATGGGTAGAGAAATACCGTCCC
AAGACTATAGACGATATAGTAGACCAAGGTGAAGTAGTGCAAGTATTGCG
GGAATGTTTGGCGGGTGGTGACTTGCCGCATCTTCTGTTCTACGGGCCTC
CGGGTACTGGTAAAACTAGTGCTATCCTGGCGGCTGCTCGGCAACTATTT
GGAGACATCAGCAGAGACCGGGTTTTTGGAGCTCAATGCTTCTGATGAAC
GGGGCATACAAGTAGTCAGGGATAAAGTGAAGACATTTGCACAGCTCACA
GTCAGCAGGACACGACCTGATGGCCGACCATGTCCTCCGTATAAGCTGGT
TATTCTGGATGAAGCTGACTCCATGACCAACGCAGCCCAGGCGGCACTGC
GACGTACCATGGAGAAGGAAACCAGGACCACGAGATTCTGTTTAATCTGC
AACTATGTGTCAAGGATCATCCCGCCTATTACTAGCAGATGTTCCAAGTT
TAGATTCAAACCACTTTCAAGAGAAAATGTTATTAAAAGGTTAAAAGAGA
TCTGTGCAAGCGAAGGCGTGGACGTGGGCAGTGGGTCAGTGCTGGAGCAG
GCGGTGGACACGTGCGGCGGGGACCTGCGCCGCGCGCTCACCGCCATGCA
GTGCTGCCAGAGACTCTACGGGCAGATCACTCTGGACGGACTCTTCGAGG
TGACGGGGCTGGTGCCTGACCGG
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