FC877902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: DPO3X_BACSU (DNA polymerase III subunit gamma/tau OS=Bacillus subtilis GN=dnaX PE=3 SV=3) HSP 1 Score: 51.2174 bits (121), Expect = 3.281e-11 Identity = 47/167 (28.14%), Postives = 75/167 (44.91%), Query Frame = 3 Query: 426 LELNASDERG---IQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQI-TLDGLFEVTGLV 914 +E++A+ G I+ +RDKVK FA V+ YK+ I+DE ++ A AL F L +I I SRC +F FK ++ + ++ R+ +I +E + V GS LE G +R AL+ + G I ++ +TG V Sbjct: 91 IEIDAASNNGVDEIRDIRDKVK-FAPSAVT-----------YKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIVGRMNKIVDAEQLQVEEGS-LEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244 HSP 2 Score: 38.1206 bits (87), Expect = 3.281e-11 Identity = 19/45 (42.22%), Postives = 26/45 (57.78%), Query Frame = 2 Query: 242 YRPKTIDDIVDQGEVVQVLRECLAGGDLPHL-LFYGPPGTGKTSA 373 +RP+ +D+V Q + + L+ L H LF GP GTGKTSA Sbjct: 10 FRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSA 54
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_PYRHO (Replication factor C large subunit OS=Pyrococcus horikoshii GN=rfcL PE=3 SV=1) HSP 1 Score: 47.3654 bits (111), Expect = 3.299e-11 Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLR---ECLAGGDLPH---LLFYGPPGTGKTSAILAAARQ 394 W+EKYRP+ + +IV+Q + ++ +R E G+ P LL GPPG+GKT+ + A A + Sbjct: 6 WIEKYRPRKLSEIVNQEQALEKVRAWIESWLHGNPPKKKALLLAGPPGSGKTTTVYALAHE 66 HSP 2 Score: 41.9726 bits (97), Expect = 3.299e-11 Identity = 36/142 (25.35%), Postives = 57/142 (40.14%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 +ELNASDER + V+ + + R K++ LDEAD++ A + N+ + I R +K L++ +VI L I EG+ V +L + GDLR A+ +Q Sbjct: 72 IELNASDERTYNKIARYVQAAYTMDIMGKR--------RKIIFLDEADNI--EPSGAPEIAKLIDKARNPIIMAANHYWEVPKEIRDRAELVEYKRLNQRDVISALVRILKREGITVPK-EILTEIAKRSSGDLRAAINDLQ 202
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_PYRFU (Replication factor C large subunit OS=Pyrococcus furiosus GN=rfcL PE=1 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 5.554e-11 Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLR---ECLAGGDLPH---LLFYGPPGTGKTSAILAAARQ 394 WVEKYRPK + +IV+Q E ++ +R E G P LL GPPG+GKT+ + A A + Sbjct: 6 WVEKYRPKKLSEIVNQEEAIEKVRAWIESWLHGHPPKKKALLLAGPPGSGKTTTVYALANE 66 HSP 2 Score: 38.5058 bits (88), Expect = 5.554e-11 Identity = 36/142 (25.35%), Postives = 58/142 (40.85%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 +ELNASDER + + V+ + + R K++ LDEAD++ A + N + I + +K L++ +V+ L I EG+ V +LE A GDLR A+ +Q Sbjct: 72 IELNASDERTYEKISRYVQAAYTMDILGKR--------RKIIFLDEADNI--EPSGAKEIAKLIDKAKNPIIMAANKYWEVPKEIREKAELVEYKRLTQRDVMNALIRILKREGITVPKEILLEIA-KRSSGDLRAAINDLQ 202
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_METLZ (Replication factor C large subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcL PE=3 SV=1) HSP 1 Score: 45.4394 bits (106), Expect = 5.555e-11 Identity = 26/58 (44.83%), Postives = 32/58 (55.17%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGG--DLPHLLFYGPPGTGKTSAILAAARQL 397 W EKYRP + DI+ G V+ + + D LLF G PG GKTSA LA AR + Sbjct: 3 WAEKYRPMHLADILGNGSAVRQIVDWAKTWTPDSRPLLFTGKPGIGKTSAALALARDM 60 HSP 2 Score: 43.1282 bits (100), Expect = 5.555e-11 Identity = 40/143 (27.97%), Postives = 60/143 (41.96%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQ--AALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAM 848 LELNASD R ++ ++V + T S GR KL+I+DE D++ A A LI N + I C F+ + + KR+KEIC E + G L ++ GD+R A+ + Sbjct: 65 LELNASDARTKTII-ERVAGNSSTTTSLFGA-GR-----KLIIIDEVDNLEGNADRGGARAIADILKEAKQPIVLIANDAYGVSDSIRRLCDPVPFRAIGVSTLQKRMKEICRFEDIACGE-DALSAIAESSAGDMRTAVNML 199 The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bpback to top |