FC877902

Overview
NameFC877902
Unique NameFC877902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2318 contig Ccv1_Contig2318:1..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: DPO3X_BACSU (DNA polymerase III subunit gamma/tau OS=Bacillus subtilis GN=dnaX PE=3 SV=3)

HSP 1 Score: 51.2174 bits (121), Expect = 3.281e-11
Identity = 47/167 (28.14%), Postives = 75/167 (44.91%), Query Frame = 3
Query:  426 LELNASDERG---IQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQI-TLDGLFEVTGLV 914
            +E++A+   G   I+ +RDKVK FA   V+           YK+ I+DE   ++  A  AL            F L      +I   I SRC +F FK ++ + ++ R+ +I  +E + V  GS LE       G +R AL+ +       G I  ++    +TG V
Sbjct:   91 IEIDAASNNGVDEIRDIRDKVK-FAPSAVT-----------YKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIVGRMNKIVDAEQLQVEEGS-LEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244          

HSP 2 Score: 38.1206 bits (87), Expect = 3.281e-11
Identity = 19/45 (42.22%), Postives = 26/45 (57.78%), Query Frame = 2
Query:  242 YRPKTIDDIVDQGEVVQVLRECLAGGDLPHL-LFYGPPGTGKTSA 373
            +RP+  +D+V Q  + + L+  L      H  LF GP GTGKTSA
Sbjct:   10 FRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSA 54          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_PYRHO (Replication factor C large subunit OS=Pyrococcus horikoshii GN=rfcL PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 3.299e-11
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLR---ECLAGGDLPH---LLFYGPPGTGKTSAILAAARQ 394
            W+EKYRP+ + +IV+Q + ++ +R   E    G+ P    LL  GPPG+GKT+ + A A +
Sbjct:    6 WIEKYRPRKLSEIVNQEQALEKVRAWIESWLHGNPPKKKALLLAGPPGSGKTTTVYALAHE 66          

HSP 2 Score: 41.9726 bits (97), Expect = 3.299e-11
Identity = 36/142 (25.35%), Postives = 57/142 (40.14%), Query Frame = 3
Query:  426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            +ELNASDER    +   V+    + +   R         K++ LDEAD++      A               +  N+   +   I  R     +K L++ +VI  L  I   EG+ V    +L +      GDLR A+  +Q
Sbjct:   72 IELNASDERTYNKIARYVQAAYTMDIMGKR--------RKIIFLDEADNI--EPSGAPEIAKLIDKARNPIIMAANHYWEVPKEIRDRAELVEYKRLNQRDVISALVRILKREGITVPK-EILTEIAKRSSGDLRAAINDLQ 202          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_PYRFU (Replication factor C large subunit OS=Pyrococcus furiosus GN=rfcL PE=1 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 5.554e-11
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLR---ECLAGGDLPH---LLFYGPPGTGKTSAILAAARQ 394
            WVEKYRPK + +IV+Q E ++ +R   E    G  P    LL  GPPG+GKT+ + A A +
Sbjct:    6 WVEKYRPKKLSEIVNQEEAIEKVRAWIESWLHGHPPKKKALLLAGPPGSGKTTTVYALANE 66          

HSP 2 Score: 38.5058 bits (88), Expect = 5.554e-11
Identity = 36/142 (25.35%), Postives = 58/142 (40.85%), Query Frame = 3
Query:  426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851
            +ELNASDER  + +   V+    + +   R         K++ LDEAD++      A               +  N    +   I  +     +K L++ +V+  L  I   EG+ V    +LE A     GDLR A+  +Q
Sbjct:   72 IELNASDERTYEKISRYVQAAYTMDILGKR--------RKIIFLDEADNI--EPSGAKEIAKLIDKAKNPIIMAANKYWEVPKEIREKAELVEYKRLTQRDVMNALIRILKREGITVPKEILLEIA-KRSSGDLRAAINDLQ 202          
BLAST of FC877902 vs. ExPASy Swiss-Prot
Match: RFCL_METLZ (Replication factor C large subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcL PE=3 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 5.555e-11
Identity = 26/58 (44.83%), Postives = 32/58 (55.17%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGG--DLPHLLFYGPPGTGKTSAILAAARQL 397
            W EKYRP  + DI+  G  V+ + +       D   LLF G PG GKTSA LA AR +
Sbjct:    3 WAEKYRPMHLADILGNGSAVRQIVDWAKTWTPDSRPLLFTGKPGIGKTSAALALARDM 60          

HSP 2 Score: 43.1282 bits (100), Expect = 5.555e-11
Identity = 40/143 (27.97%), Postives = 60/143 (41.96%), Query Frame = 3
Query:  426 LELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQ--AALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAM 848
            LELNASD R   ++ ++V   +  T S     GR     KL+I+DE D++   A    A               LI N    +   I   C    F+ +    + KR+KEIC  E +  G    L    ++  GD+R A+  +
Sbjct:   65 LELNASDARTKTII-ERVAGNSSTTTSLFGA-GR-----KLIIIDEVDNLEGNADRGGARAIADILKEAKQPIVLIANDAYGVSDSIRRLCDPVPFRAIGVSTLQKRMKEICRFEDIACGE-DALSAIAESSAGDMRTAVNML 199          
The following BLAST results are available for this feature:
BLAST of FC877902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DPO3X_BACSU3.281e-1128.14DNA polymerase III subunit gamma/tau OS=Bacillus s... [more]
RFCL_PYRHO3.299e-1139.34Replication factor C large subunit OS=Pyrococcus h... [more]
RFCL_PYRFU5.554e-1144.26Replication factor C large subunit OS=Pyrococcus f... [more]
RFCL_METLZ5.555e-1144.83Replication factor C large subunit OS=Methanocorpu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AD06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877902 ID=FC877902; Name=FC877902; organism=Citrus clementina; type=EST; length=923bp
CTGTCAGAAACTGGCGGGTAAAAAATGTACAAAGCAGGCAGCCAGATCTT
ATAAGTCAACAAAATAAATACAAAACAGATGAATAAAAGCTAACTAAAAT
AGCTTGTTATTTAGTTACCTAAAAGCTTTAATAATGCAGGCATTCCTTAA
AACGGGTAAGATATCCAACAATGAAAAACCAGCATCATCAGTTCCGAAAA
CTGGCGGCAAGAAGAAACCACCGGCACCATGGGTAGAGAAATACCGTCCC
AAGACTATAGACGATATAGTAGACCAAGGTGAAGTAGTGCAAGTATTGCG
GGAATGTTTGGCGGGTGGTGACTTGCCGCATCTTCTGTTCTACGGGCCTC
CGGGTACTGGTAAAACTAGTGCTATCCTGGCGGCTGCTCGGCAACTATTT
GGAGACATCAGCAGAGACCGGGTTTTTGGAGCTCAATGCTTCTGATGAAC
GGGGCATACAAGTAGTCAGGGATAAAGTGAAGACATTTGCACAGCTCACA
GTCAGCAGGACACGACCTGATGGCCGACCATGTCCTCCGTATAAGCTGGT
TATTCTGGATGAAGCTGACTCCATGACCAACGCAGCCCAGGCGGCACTGC
GACGTACCATGGAGAAGGAAACCAGGACCACGAGATTCTGTTTAATCTGC
AACTATGTGTCAAGGATCATCCCGCCTATTACTAGCAGATGTTCCAAGTT
TAGATTCAAACCACTTTCAAGAGAAAATGTTATTAAAAGGTTAAAAGAGA
TCTGTGCAAGCGAAGGCGTGGACGTGGGCAGTGGGTCAGTGCTGGAGCAG
GCGGTGGACACGTGCGGCGGGGACCTGCGCCGCGCGCTCACCGCCATGCA
GTGCTGCCAGAGACTCTACGGGCAGATCACTCTGGACGGACTCTTCGAGG
TGACGGGGCTGGTGCCTGACCGG
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