FC877903

Overview
NameFC877903
Unique NameFC877903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3467 contig Ccv1_Contig3467:1..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MPI_BOVIN (Mannose-6-phosphate isomerase OS=Bos taurus GN=MPI PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.635e-33
Identity = 82/194 (42.27%), Postives = 108/194 (55.67%), Query Frame = 3
Query:  243 AARRLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSG-KRTDIDKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNVPEIVELVGSEEA 821
            AA+R+  L+C VQ+Y WG+ GS+S V++L   +    +   D+PYAE WMGTH  G + +                           +L  WI  N + LG KV   +   LPFLFKVLSV  ALSIQAHP+KELA+ LH   P  Y D NHKPEMA+A+T F+ LC F  ++E+ + L  VPE   L+G   A
Sbjct:    2 AAQRVFPLSCVVQQYAWGKMGSNSEVARLLASSDPLAQISEDRPYAELWMGTHPRGDAKILDNRISQK-------------------TLGQWIADNQDSLGSKVKDTFNGKLPFLFKVLSVETALSIQAHPNKELAEKLHLQAPQHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLTKVPEFQFLIGDNAA 176          
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MPI_RAT (Mannose-6-phosphate isomerase OS=Rattus norvegicus GN=Mpi PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.756e-33
Identity = 83/190 (43.68%), Postives = 105/190 (55.26%), Query Frame = 3
Query:  252 RLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDI--DKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNVPEIVELVGSE 815
            R+  L+C VQ+Y WG+ GS S V+ L    S   T I  DKPYAE WMG H  G + +                           +L  WI +N N LG KV   +   LPFLFKVLSV  ALSIQAHP+KELA+ LH   P  Y D NHKPEMA+A+T F+ LC F  ++E+ + L+ VPE   L+G +
Sbjct:    5 RVFPLSCVVQQYAWGKVGSKSEVACLLAC-SDPLTQISEDKPYAELWMGAHPRGDAKILDNRISQK-------------------TLGQWIAENQNSLGQKVKDTFNGKLPFLFKVLSVETALSIQAHPNKELAEKLHLQAPEHYPDANHKPEMAIALTPFQGLCGFRPVEEIVTFLKKVPEFQSLIGED 174          
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MPI_ASHGO (Mannose-6-phosphate isomerase OS=Ashbya gossypii GN=PMI1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.211e-33
Identity = 87/195 (44.62%), Postives = 105/195 (53.85%), Query Frame = 3
Query:  252 RLLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDI--DKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPN-VLGDKVLHRWGC--DLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNVPEIVELVGSEEA 821
            +L RL    Q+YDWG+ GS S V++ Y  NS     I  DKPYAE WMGTH   PS                            V+L   I  NP  +LG   + ++    DLPFLFKVLS+ K LSIQAHPDK L + LH   P  Y DDNHKPEMA+AI++FE  C F  L+EL   LQ +PE   LVG + A
Sbjct:    4 KLFRLDAGYQQYDWGKIGSSSAVAQ-YAANSDPSVQIEEDKPYAELWMGTHHKVPSRHHDTK----------------------VALSDLIAANPEGMLGSGNVEKFHSRKDLPFLFKVLSIEKVLSIQAHPDKNLGRRLHIQDPKNYPDDNHKPEMAIAISDFEGFCGFKPLEELAEELQRIPEFRSLVGEDIA 175          
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MPI_NEUCR (Mannose-6-phosphate isomerase OS=Neurospora crassa GN=103E1.170 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.384e-32
Identity = 80/192 (41.67%), Postives = 107/192 (55.73%), Query Frame = 3
Query:  255 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGK---RTDIDKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNVPEIVELVGSEEA 821
            L++L C V  Y+WG+ G+ S  ++    +      + D +KPYAE WMGTH S PS                         G   +L   I  N  +L   +  R+   LPFLFKVLS+ KALSIQAHP+K+LA+ LH   P  Y DDNHKPEMA+AI++FE LC F  L+E+   L NVP + +LVG ++A
Sbjct:    6 LIQLQCGVNSYEWGKKGNSSRAAQFAAASLDDNEFKIDEEKPYAELWMGTHPSNPS--------------------KDKHTGR--TLLELIQDNQALLSPAIAERYQNKLPFLFKVLSIQKALSIQAHPNKKLAEKLHARDPKNYPDDNHKPEMAIAISDFEGLCGFRPLKEIAHFLDNVPALRQLVGEDKA 175          
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MPI_ASPFU (Mannose-6-phosphate isomerase OS=Aspergillus fumigatus GN=pmi1 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.083e-32
Identity = 82/192 (42.71%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  255 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDI--DKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNVPEIVELVGSEEAN 824
            LLRL C V  YDWG+ G +S  +K     +     I  DKPYAE WMGTH S PS                             +L   +  N  ++  +V  R+G  LPFLFKVLS+ KALSIQAHP+K+LA+ LH   P  Y DDNHKPEM +AIT FE LC F  L E+   L+ V  + +LVG   A+
Sbjct:    6 LLRLQCGVNSYDWGKVGHESAAAKYAATTAASDFSIQSDKPYAELWMGTHPSLPSKDLETQR----------------------TLLDMVQDNQALISQEVSERYGGKLPFLFKVLSIRKALSIQAHPNKKLAEKLHARDPRNYPDDNHKPEMTIAITPFEGLCGFRPLVEIIHFLKAVAPLRQLVGERAAS 175          
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MPI_EMENI (Mannose-6-phosphate isomerase OS=Emericella nidulans GN=manA PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.171e-31
Identity = 82/191 (42.93%), Postives = 101/191 (52.88%), Query Frame = 3
Query:  255 LLRLTCSVQKYDWGRTGSDSLVSKLYGLN--SGKRTDIDKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNVPEIVELVGSEEA 821
            LLRL C V  YDWGR G +S  +K       S    + DKPYAE WMGTH S PS                             +L   +  N  ++  +V  R+G  LPFLFKVLS+ KALSIQAHP+K+LA+ LH   P  Y DDNHKPEM +AIT FE LC F  L E+   L+ V  +  L+G + A
Sbjct:    5 LLRLQCGVNSYDWGRVGPESAAAKYAAATAPSDFTIEADKPYAELWMGTHPSLPSKDVETQR----------------------TLLDMVQDNLALMSPEVSERYGGKLPFLFKVLSIRKALSIQAHPNKKLAEALHARDPRNYPDDNHKPEMTIAITPFEGLCGFRPLAEIVHFLKAVAPLRYLIGVQTA 173          
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MPI_DICDI (Probable mannose-6-phosphate isomerase OS=Dictyostelium discoideum GN=mpi PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.916e-31
Identity = 77/182 (42.31%), Postives = 101/182 (55.49%), Query Frame = 3
Query:  255 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDK---PYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNVPE 791
            ++ L C  Q Y+WG+ GS+S V+KL    + + +DI K   PYAE WMG H S PS +                           S  S      ++ G+ V  R+G D PFLFKVLS+  ALSIQAHPD +LA+ L K  PN+YKD  HKPE+A+A T FE LCSF  L E++S +  +PE
Sbjct:   21 IVLLKCVSQNYEWGKYGSNSTVAKLLKGYAKECSDIIKETIPYAELWMGDHVSAPSKVEYKNKELKLREYIDTVQKEINEKSSTSSSSS-----SSIRGEIVEKRFGNDFPFLFKVLSIRTALSIQAHPDSQLAQVLFKKYPNIYKDPYHKPEIAIATTPFEALCSFRPLSEIQSFIDTIPE 197          
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MPI_CAEEL (Probable mannose-6-phosphate isomerase OS=Caenorhabditis elegans GN=ZK632.4 PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 3.527e-28
Identity = 77/194 (39.69%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  255 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGK--RTDIDKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPNVLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNVPEIVELVGSEEANRV 830
            LL+L C+V  Y WG  G+ S+   L  L+ G     D DKPYAEFW+GTH +GP+ +                          ++LK  +  +P + G    H  G +L FLFKVLSV   LSIQ HP KE  K LH   P  Y DDNHKPE+A+A+TEFE+L  F    ++   L+   EI EL+  EE +++
Sbjct:    2 LLKLKCTVNNYAWGPKGNSSMAGSL-ALDGGHIPNLDKDKPYAEFWVGTHANGPAHVIEKD----------------------IALKQLLATSPELQGK---HEKG-NLSFLFKVLSVLGPLSIQIHPTKEQGKLLHATDPKNYPDDNHKPEIAIALTEFELLSGFRQHSQISEYLKLYSEIQELLTEEEKSQI 168          
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MPI_CRYNE (Mannose-6-phosphate isomerase OS=Cryptococcus neoformans GN=MAN1 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.899e-27
Identity = 76/191 (39.79%), Postives = 101/191 (52.88%), Query Frame = 3
Query:  255 LLRLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRT-DIDKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPNVLGDKVLHRW-GC---DLPFLFKVLSVAKALSIQAHPDKELAKTLHKLLPNVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNVPEIVELVGS 812
            + +++  +  YDWG+ GS SL ++L   +    + D DK YAE WMGTH + PS L                        +   L   +  +P ++G  V  ++  C    LPFLFKVLS+  ALSIQAHPDK LAK L    P+VYKD NHKPEMA+A+T F    +F+ L  L   L  VPE+ E V S
Sbjct:    5 VFKISPGINSYDWGKKGSASLAAQLATTSIPDFSIDEDKAYAELWMGTHPNNPSRL-----------------------SDNTLLSEHLKSHPELIGSSVSSKFEDCKDGSLPFLFKVLSIGTALSIQAHPDKPLAKKLFDEKPDVYKDPNHKPEMAIALTPFLAFLNFLPLSVLLLHLLTVPELQEFVDS 172          
BLAST of FC877903 vs. ExPASy Swiss-Prot
Match: MANA_SALTY (Mannose-6-phosphate isomerase OS=Salmonella typhimurium GN=manA PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.801e-17
Identity = 67/186 (36.02%), Postives = 94/186 (50.54%), Query Frame = 3
Query:  261 RLTCSVQKYDWGRTGSDSLVSKLYGLNSGKRTDIDKPYAEFWMGTHESGPSFLXXXXXXXXXXXXXXXXXXXXXXCGEIVSLKSWILKNPN-VLGDKVLHRWGCDLPFLFKVLSVAKALSIQAHPDKE-----LAKTLHKLLP-----NVYKDDNHKPEMALAITEFEVLCSFISLQELKSVLQNV 785
            +L  SVQ Y WG   S + +++LYG+ + ++    +P AE WMG H    S +                       GE VSL+  I KN   +LG+ V +R+G +LPFLFKVL  A+ LSIQ HP+K       AK     +P       YKD NHKPE+  A+T F  + +F    ++ S+LQ V
Sbjct:    3 KLINSVQNYAWG---SKTALTELYGIANPQQ----QPMAELWMGAHPKSSSRITTAN-------------------GETVSLRDAIEKNKTAMLGEAVANRFG-ELPFLFKVLCAAQPLSIQVHPNKRNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSDIVSLLQPV 161          
The following BLAST results are available for this feature:
BLAST of FC877903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MPI_BOVIN1.635e-3342.27Mannose-6-phosphate isomerase OS=Bos taurus GN=MPI... [more]
MPI_RAT4.756e-3343.68Mannose-6-phosphate isomerase OS=Rattus norvegicus... [more]
MPI_ASHGO6.211e-3344.62Mannose-6-phosphate isomerase OS=Ashbya gossypii G... [more]
MPI_NEUCR1.384e-3241.67Mannose-6-phosphate isomerase OS=Neurospora crassa... [more]
MPI_ASPFU3.083e-3242.71Mannose-6-phosphate isomerase OS=Aspergillus fumig... [more]
MPI_EMENI1.171e-3142.93Mannose-6-phosphate isomerase OS=Emericella nidula... [more]
MPI_DICDI9.916e-3142.31Probable mannose-6-phosphate isomerase OS=Dictyost... [more]
MPI_CAEEL3.527e-2839.69Probable mannose-6-phosphate isomerase OS=Caenorha... [more]
MPI_CRYNE3.899e-2739.79Mannose-6-phosphate isomerase OS=Cryptococcus neof... [more]
MANA_SALTY2.801e-1736.02Mannose-6-phosphate isomerase OS=Salmonella typhim... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877903 ID=FC877903; Name=FC877903; organism=Citrus clementina; type=EST; length=844bp
AAAAAGGAAACTGTACAGTGAGTCAGAGTCATAATAAGCATAGCCCACTT
CGTCTTCACTCAATCTCTCGAATCTCTCTCTTTCAACACGCTGTTTCCCT
CTCTCTTGTTACCCTTTCAAACTCTTTAAAAACCAGCAATGCCACCCCAT
TCTAGCCATTACCCATTTACCCATACACTCTTTTAGGACTGCCCGTCTGC
TCATTTCTTCGAAAATTCAGTACCATGGACGCTGATTCGAAGGCTGCAAG
GAGGCTGCTGAGGCTGACGTGTTCCGTCCAGAAATACGATTGGGGCCGAA
CCGGTTCTGACTCCCTCGTTTCCAAGCTGTACGGGTTGAACTCTGGGAAG
AGGACTGATATCGACAAGCCTTATGCCGAGTTCTGGATGGGAACTCACGA
GTCTGGGCCCTCGTTTCTGGCGAAGAAGGGCGGTGCTGGTGGCGTTGCTG
GCGCAGTAGTAAACGGGTCGTCGGCGAATGGTGGGTGTGGTGAGATTGTC
AGTTTGAAATCATGGATATTGAAGAATCCTAATGTGCTTGGTGATAAGGT
TTTACACCGTTGGGGCTGTGATCTCCCTTTCTTGTTCAAGGTACTTTCAG
TTGCGAAAGCATTGTCAATACAGGCTCATCCAGATAAGGAGTTGGCAAAG
ACACTGCACAAATTACTGCCAAATGTATATAAGGATGACAATCACAAGCC
TGAGATGGCCTTGGCAATAACAGAGTTCGAGGTCCTTTGTAGCTTTATCA
GTCTTCAGGAGCTCAAGAGTGTGCTGCAAAACGTTCCTGAGATTGTGGAA
CTTGTTGGCAGCGAGGAAGCAAACCGAGTTTTGCATGTTGAAAT
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