FC919299

Overview
NameFC919299
Unique NameFC919299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length2452
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC919299_ssr41 microsatellite FC919299_ssr41:41..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10441 contig Ccv1_Contig10441:19..2470. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919299 vs. ExPASy Swiss-Prot
Match: HUTH_BARQU (Histidine ammonia-lyase OS=Bartonella quintana GN=hutH PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.436e-35
Identity = 127/470 (27.02%), Postives = 215/470 (45.74%), Query Frame = 1
Query:  295 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFG--ATSHRTTKNGGALQKELIKFLNAGIFGNGTKSSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILKAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGQIIDPQEASKPAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEMIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVHSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 1698
            V+N G  TL   Q+ AI  +    +L       ++  +D + E        YG+ TGFG  A+      +   LQ+ LI         +       L  +  R  M +++ +L +G SG+R E++  +  +L   + P +P +G++ ASGDL PL+++  ++ G    +A   N ++       K   F    L+ KEGLAL+NGT   + LA   LF+         +  A+  + + G         H L+ H GQI  +  +E ++  S      +  H  D   +  QD Y +R  PQ +G   +++  A K++  E N+V DNPLI +S  + + GGNF   P+  S D   LA+  IG +   + + +V+   + GLP  L+  +N  L+ GF  AEI  A+  SE + +A+P +        + +D  S+    +R+     + L  +     +A  Q I+ R
Sbjct:    4 VLNPGKVTLN--QLEAIYWNGEVSKLHNDTHLAIRKGADRIAEIAAGSQPVYGINTGFGKLASIKIDANDVAVLQRNLI-------LSHCCAVGAPLAENIVRLMMTLKLISLGRGASGVRLELVHLLESMLAKGVIPVIPEKGSVGASGDLAPLAHMVAVMIG--EGEAFFQNIRMSGAAALEKARLFP-ITLEAKEGLALINGTQTSTALALAGLFQGYRALCGGLLAGALTTDAVMGSTAPFHPDIHILRGHYGQIVVSQTLEKLIKDSE----IRAAHLCDDDHR-VQDPYCIRCQPQVMGACFDVLVAAAKTLIIEANAVTDNPLI-LSNGEVVSGGNFHAEPVAFSADQIALALCEIGSISQRRIALMVDPTVSCGLPPFLA--QNAGLNSGFMIAEITAAALMSENKQMAHPASVDSTPTSANQEDHVSMACHGARRLLAMNENLFTIIGIETLAAAQGIEYR 453          
BLAST of FC919299 vs. ExPASy Swiss-Prot
Match: HUTH_BART1 (Histidine ammonia-lyase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=hutH PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.000e-34
Identity = 117/436 (26.83%), Postives = 204/436 (46.79%), Query Frame = 1
Query:  319 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFG--ATSHRTTKNGGALQKELIKFLNAGIFGNGTKSSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILKAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGQIIDPQEASKPAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEMIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVHSAEQHNQDVNSLGLISSRK 1620
            +T++++ AI  +    +L       ++  +  + E +      YG+ TGFG  A+          LQ+ LI     G+          L  +  R  M +++ +L +G SG+R E++  +  +L   + P +P +G++ ASGDL PL+++A ++ G    +A   N ++       K AG     L+ KEGLAL+NGT   + LA   LF A        +  A+  +   G         H L+ H GQI  +  +E +++ S     A  L   + +Q P    Y +R  PQ +G   +++  A K++  E N+V DNPLI +   + + GGNF   P+  + D   LA+  IG +   + + +V+   + GLP+ L+   N  L+ GF  AE+  A+  SE + +A P +        + +D  S+    +R+
Sbjct:   10 VTLSELEAIYFNGEISKLHHDTHLVIERGAQRIAEIVAGSEPVYGINTGFGKLASIKIDADKVTVLQRNLILSHCCGV-------GDPLAENIVRLIMSLKLISLGRGASGVRLELVNLLENMLEKGVIPVIPEKGSVGASGDLAPLAHMAAVMMG--EGEAFFQNIRMSGALALEK-AGLSPIILEAKEGLALINGTQTSTALALAGLFRAYRALCGGLLAGALTTDATMGSTAPFHPDIHILRGHYGQIAVSKTLEKLVEDSEI--RAAHLRGDERVQDP----YCIRCQPQVMGACFDILLAAAKTLIIEANAVTDNPLI-LRNGEVVSGGNFHAEPVAFAADQIALALCEIGSISQRRIALMVDPAVSYGLPAFLA--HNAGLNSGFMIAEVTAAALMSENKQMAYPASVDSTPTSANQEDHVSMACHGARR 426          
BLAST of FC919299 vs. ExPASy Swiss-Prot
Match: PALY_AGABI (Phenylalanine ammonia-lyase (Fragment) OS=Agaricus bisporus GN=palA PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.616e-32
Identity = 67/134 (50.00%), Postives = 98/134 (73.13%), Query Frame = 1
Query: 1306 HGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVHSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE 1707
            HGGNFQ   +  +M+ TRLA+  IGK++FAQ +EL+N   N GLP +L+   +PSL+Y  KG +IA A+Y +EL +LA+PV+ H+ SAE HNQ VNS+ L+S+R T  ++D+L ++ +T+L  LCQA+DLR L+
Sbjct:    7 HGGNFQAMAVTNAMEKTRLALHHIGKIIFAQSTELINPATNRGLPPSLAAS-DPSLNYHVKGVDIATAAYAAELGYLASPVSTHIQSAEMHNQAVNSMALVSARATINSIDVLSMLVATYLYNLCQALDLRALQ 139          
The following BLAST results are available for this feature:
BLAST of FC919299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
HUTH_BARQU2.436e-3527.02Histidine ammonia-lyase OS=Bartonella quintana GN=... [more]
HUTH_BART16.000e-3426.83Histidine ammonia-lyase OS=Bartonella tribocorum (... [more]
PALY_AGABI5.616e-3250.00Phenylalanine ammonia-lyase (Fragment) OS=Agaricus... [more]

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Properties
Property NameValue
Genbank descriptionC06055A01T7 PCR Citrus clementina cDNA clone C06055A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919299 ID=FC919299; Name=FC919299; organism=Citrus clementina; type=EST; length=2452bp
AATTTCCTTTAGCTCATTCATTCTTCATCACTCCCATTCATTCTTCTTCT
TCTTCTTCTTCTTTCTACAGTTTTGGTATTTTTTGTAATTGCAGTAACAT
TTACGTAAAACGATATGGAGATAGGTGCCACTACTGAGAATGGTCACCAG
AACGGTGGCCTGGAGGGTTTGTGCAAGAATAACAATTACAATTACAGTTC
TGGGGATGCGTTGAACTGGGGAGTGATGGCGGAGACGTTGAAAGGGAGCC
ATTTGGAGGAAGTGAAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTC
AACCTCGGTGGTGAGACGTTGACCGTAGCACAAGTGGCTGCCATTGCCAC
GTCCTCTACGAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGG
CCAGCAGTGATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTAC
GGCGTTACCACTGGCTTTGGTGCCACTTCTCATCGGACAACCAAGAACGG
CGGTGCTCTTCAAAAGGAGCTCATTAAATTTTTGAACGCTGGAATCTTTG
GAAACGGAACAAAGTCATCTCACACGCTACCTCACTCAGCAACAAGGGCA
GCCATGCTTGTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGCATCCG
ATTTGAAATCCTGAAAGCGATCACAAAGCTGCTCAATCACAACATCACTC
CATGCCTCCCTCTTCGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCT
CTTTCCTACATTGCCGGACTGCTCACCGGCCGGCCCAATTCTAAGGCCAC
CGGGCCCAATGGACAGATCATTGATCCCCAGGAAGCCTCTAAACCAGCGG
GTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTGTCAAT
GGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGGTTCTGTTTGAGGCTAA
CAACCTTGCTCTGTTATCAGAAATTTTGTCAGCTATTTTTGCTGAAGTCA
TGCAAGGCAAACCTGAGTTCACCGATCACTTGACACACAAATTGAAGCAC
CATCCTGGCCAAATTGAGGCTGCTGCTATAATGGAACATATCCTCGATGG
CAGCTCTTATGTTAACGTGGCTAAGAAGTTGCATGAGATTGATCCTCTGC
AGAAGCCGAAACAGGATCGTTATGCCCTGAGAACTTCACCACAATGGCTC
GGCCCTCAGATCGAAATGATTCGGTTTGCAACCAAGTCTATTGAACGGGA
GATCAACTCGGTGAATGACAATCCCCTGATCGACGTTTCAAGGAACAAGG
CCTTACATGGTGGCAATTTTCAGGGGACCCCAATTGGTGTCTCAATGGAC
AATACCCGTTTGGCTATTGCGGCAATAGGGAAGCTCATGTTTGCCCAATT
TTCTGAACTTGTCAACGATTTTTACAACAATGGATTGCCGTCAAATCTGT
CTGGTGGCAGGAATCCCAGCCTGGATTATGGTTTCAAGGGCGCTGAAATT
GCTATGGCTTCCTATTGTTCGGAGCTCCAATTTCTTGCCAATCCTGTTAC
TAACCACGTCCATAGTGCTGAACAGCACAACCAAGATGTAAACTCCTTGG
GATTGATCTCTTCCAGGAAGACTGCTGAAGCAGTCGACATCCTGAAGCTC
ATGTCTTCCACATTCTTGGTAGCGCTTTGCCAGGCTATTGATTTGAGACA
TTTGGAGGAAAATTTGAAGCACACAGTCAAGAATACTGTCAGCCAAGTAG
CTAAGAAAGTCTTAACCGTCGGTGCTAGTGGAGAGCTTCATCCATCAAGA
TTCTGTGAGAAGGATCTGCTCAAAGCGGCTGATCGCGAACACGTCTTTGC
ATACATTGATGACCCCTGCAGTGCTACCTATCCATTGATGCAAAAGCTAA
GGCAAGTACTTGTTGAGCACGCACTGAACAATGGAGAGAACGAGAAGACT
GCCAACTCTTCAATCTTCCAGAAGATTGCAGCCTTTGAGGAGGAATTGAA
AACCGTTTTGCCGAAAGAAGTTGAGAATGCCAGGCAGACTGTTGAGAATG
GAAGTCCAACAATTCCCAACAGGATCAAAGAATGCAGGTCTTACCCGTTG
TACAGGTTAGTGAGGGAGGGGCTCGGGTCTAATTTTCTAACAGGGGAAAA
AGTTACATCGCCCGGCGAGGAATTTGACAAAGTTTTTACAGCAATGTGCC
AGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAATGGC
GCCCCTCTTCCAATTTGTTAGTTGTTTTTATTTTGTTTAATAACATGGTC
TTCAATCCCTTGTGTTCTTGTGTTCATAGAATTTGCCCATGCGAGTCAGT
GGTACAAATCCATCTGTAATATTTCAATCACTTCTATTGGTTTTTTCATA
TAAGGTTATAAGACTTATTGTCCTTTATTTTAAAAAAAAAAAAAAAAAAA
AA
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