FC919300

Overview
NameFC919300
Unique NameFC919300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1367
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC919300_ssr1053 microsatellite FC919300_ssr1053:1053..1064. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC919300 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.064e-34
Identity = 81/208 (38.94%), Postives = 126/208 (60.58%), Query Frame = 2
Query:  425 AQYLVPAMRNIQNAINGANLGSQIKVSTAIAGALDTKSSPPSAGSFNQDYRPILDPLITFLNENNSPLLVNLYPYFAIVGDR-QISLDYALFR----SQQPVVSDPPLSYQNLFDAQLDATYAALEKPVGGSLDIVVSESGWPSAGDG--ALTSVDNARTYNNNLIQHV--KQGSPKKPSRPIETYIFAMFDEDKKGDEI-ERHWGLF 1018
            A  L+PA+ ++ NA+  +NL +QIKVST  A ++   + PPS   FNQ +  I+ PL+ FL++  SPL++NLYPY+  + ++  + LD  LF     S++ V  +  L Y N+ DA +DA Y +++      + ++V+ESGWPS GD      ++DNA TYN+NLI+HV  + G+P  P      YI+ +F+ED +   + E  WGLF
Sbjct:   37 APLLLPAIESLYNALVASNLHTQIKVSTPHAASIMLDTFPPSQAYFNQTWHSIMVPLLQFLSKTGSPLMMNLYPYYVYMQNKGVVPLDNCLFEPLTPSKEMVDPNTLLHYTNVLDAMVDAAYVSMKNLNVSDVAVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHVFDRTGTPLHPEMTSSVYIYELFNEDLRAPPVSEASWGLF 244          
The following BLAST results are available for this feature:
BLAST of FC919300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E131_ARATH5.064e-3438.94Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC06055A02T7 PCR Citrus clementina cDNA clone C06055A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919300 ID=FC919300; Name=FC919300; organism=Citrus clementina; type=EST; length=1367bp
TTTTTCTCCACGCATGGCTAAATTCTTTAACTCTCCCAATACCCCTTCAA
TGGCTTCCGTGATCATCTTACTTCTGGGGATGCTAATCGCTACCCTGGAC
ACAACAAGTGCTCAAATAGGTGTTTGTTATGGAATGCTTGGTGACAACTT
GCCATCAAAACCAGATGTCATAGCTCTCTATAACCAAAATAACATCAGAA
GAATGAGACTCTATGATCCAAACAAAGAAGCTCTCGAAGCTCTCCGTGGC
TCCAACATTGAAGTCATGATGGGCGTTTCCAACGATTTTGACCTCCTCCG
AAGAATTGCTTCCAAGCAAGCCGAAGCAAATACCTGGGTCCAAGACAACG
TCCAAAATTTTGTTAACAATGTCAAGTTCAAATATATTGCTGTAGGAAAT
GAAGCAAAACCAGGAGACGACTTTGCGCAGTATCTTGTACCCGCCATGAG
AAACATACAAAACGCCATTAACGGAGCTAACCTTGGAAGCCAAATCAAAG
TTTCCACAGCCATTGCTGGAGCTCTTGATACAAAATCCTCTCCGCCGTCA
GCTGGCTCCTTTAATCAAGATTACAGACCAATTCTCGATCCCCTCATTAC
CTTCCTTAACGAAAACAATTCCCCGTTGCTTGTTAACTTGTACCCTTACT
TTGCCATCGTTGGTGACCGTCAAATATCTCTTGATTATGCACTATTTAGG
TCCCAACAACCGGTTGTTTCGGACCCTCCGTTGAGTTACCAGAATCTTTT
TGATGCCCAGTTGGATGCTACTTACGCTGCGTTAGAAAAACCGGTTGGGG
GCTCGTTGGATATTGTTGTATCGGAGAGTGGTTGGCCTTCAGCAGGTGAC
GGAGCGTTAACGTCTGTCGATAATGCAAGGACTTATAATAATAACTTGAT
ACAGCATGTGAAGCAAGGATCACCAAAGAAGCCTTCAAGGCCTATTGAGA
CTTACATTTTTGCTATGTTTGATGAGGATAAAAAGGGAGATGAGATTGAG
AGGCATTGGGGACTTTTTTCTCCAGATAGACAGACTAAATACCAAGTTAA
TTTTAATTAATTAACCAAATCAGAGTAGCTGCATGCGGCAGCAGATTTGA
AGTTAAATTTGTAATGGAATAAATTATTGCACAATATGTATTAGTAATCA
AGAGTTTGCATCATCACCTTGCATCGGTGCACGAGGCCAAATTTCATTAT
CAATAATGTCATGGTTACGGTATTTAATTATATATCACTGCCTCTTTCAA
TTTTTGAATAGCTTAATTACATGCAATGTAATTTTTCCTTGGCCATTGTG
CAATGTAAAAACGCCCCCACAATACCAAATTAATTTCAACTAGTAAGAGC
ACAACAGTGAATTAAGC
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