FC919310

Overview
NameFC919310
Unique NameFC919310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig865 contig Ccv1_Contig865:163..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919310 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.958e-44
Identity = 83/162 (51.23%), Postives = 105/162 (64.81%), Query Frame = 1
Query:    1 DACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRAPEGIQ--TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHG-ANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGCL 477
            DACENWGFFE++NHGI  E MD VE++TK HY++  EQRF E  +    EG     +   +DWESTF+VRHLP+S I ++PDLD++YR++M                          GYL K F G A  PTFGTKVS+YPPCP+PDL++GLRAHTDAGG +
Sbjct:   29 DACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDVNKAEKLDWESTFFVRHLPESNIADIPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTDAGGII 190          
BLAST of FC919310 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.504e-43
Identity = 84/161 (52.17%), Postives = 103/161 (63.98%), Query Frame = 1
Query:    1 DACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRAPEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGCL 477
            DACENWGFFEL+NHGI  E M+ VE + K HYR+  EQRFKE  +         + +++DWESTF++RHLP S I+++PDLD++ R  M                          GYLK+VF G +   PTFGTKVSNYPPCPKPDLIKGLRAHTDAGG +
Sbjct:   28 DACENWGFFELLNHGISHELMNRVEAVNKEHYRRFREQRFKEFASKTLDSVENVDPDNLDWESTFFLRHLPTSNISQIPDLDDDCRATMKEFARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGII 188          
BLAST of FC919310 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.120e-42
Identity = 83/161 (51.55%), Postives = 101/161 (62.73%), Query Frame = 1
Query:    1 DACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRAPEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGCL 477
            DACENWG +EL+NHGI  E M+ VE + K HYR+  EQRFKE  +         E  ++DWESTF++RHLP S I+++PDLD++ R  M                          GYLKKVF G +   PTFGTKVSNYPPCPKP+LIKGLRAHTDAGG +
Sbjct:   28 DACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEFASKTLDTVENVEPENLDWESTFFLRHLPTSNISQIPDLDDDCRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGII 188          
BLAST of FC919310 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.592e-40
Identity = 84/165 (50.91%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    1 DACENWGFFELVNHGIEPEFMDTVERLTKAHYR----KCMEQRFKELVASRAPEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGCL 477
            DACENWGFFEL+NHGI  E  +  E + K HYR    +  EQRFKE  A     G   + +++DWESTF++RHLP S I++VPDLDE+    M                          GYLK+VF G +   PTFGTKVSNYPPCPKP+LIKGLRAHTDAGG +
Sbjct:   18 DACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENVDGDNLDWESTFFLRHLPTSNISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGII 182          
BLAST of FC919310 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.429e-22
Identity = 60/166 (36.14%), Postives = 88/166 (53.01%), Query Frame = 1
Query:    1 DACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFK-----ELVASRAPEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHG--ANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGCL 477
            + CE WGFF+LVNHGI  E ++ V++++   Y K  E+RF+     +L+ +   EG    ++++DWE  F ++       NE P    ++ + M                          G +KK F G   + P FGTKVS+YPPCP+ DL+KGLRAHTDAGG +
Sbjct:   25 NGCEEWGFFQLVNHGIPVELLERVKKVSSECY-KLREERFEGSKPVQLLDTLVKEGDGQRLDNVDWEDVFVLQD-----DNEWPSNPPDFEETMKEYREEIRKLAEKMMEVMDENLGFEKGCIKKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAHTDAGGVI 184          
The following BLAST results are available for this feature:
BLAST of FC919310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACCO1_ORYSJ2.958e-4451.231-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO2_DORSP2.504e-4352.171-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO1_DORSP2.120e-4251.551-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO_DENCR2.592e-4050.911-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO_MUSAC1.429e-2236.141-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]

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Properties
Property NameValue
Genbank descriptionC06055A12T7 PCR Citrus clementina cDNA clone C06055A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919310 ID=FC919310; Name=FC919310; organism=Citrus clementina; type=EST; length=505bp
GATGCTTGTGAAAACTGGGGCTTCTTTGAGCTGGTGAATCATGGAATTGA
GCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGCGCATTACAGAA
AATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCAGGGCACCTGAA
GGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGCACTTTCTATGT
GCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGATCTTGATGAGG
AATACAGGAAGGTGATGAAGGAATTTGCATTGAAATTGGAGAAATTAGCA
GAGGAGCTATTGGACTTGTTATGCGAGAATCTTGGATTAGAGAAGGGGTA
CTTGAAAAAGGTCTTTCACGGGGCAAACGGACCAACCTTTGGTACCAAAG
TTAGCAACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGTCTCCGG
GCACACACCGATGCCGGTGGATGCTTGTCAAAATTGGGCACACACCGATG
CCGGA
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