FC919312

Overview
NameFC919312
Unique NameFC919312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length304
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig504 contig Ccv1_Contig504:281..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A1C_SOYBN (1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.038e-36
Identity = 69/104 (66.35%), Postives = 90/104 (86.54%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQE---MDCNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGT +DR+TL++++SFIN+K IHLV DEIY+ATVFS P F S+AE+++E   ++C+R+L+HI+YSLSKDMG PGFRVGI+YS+ND VV+C RKMSSFG V
Sbjct:  208 PSNPLGTVMDRNTLRTVMSFINEKRIHLVSDEIYSATVFSHPSFISIAEILEEDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVHCARKMSSFGLV 311          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A11_CUCMA (1-aminocyclopropane-1-carboxylate synthase CMW33 OS=Cucurbita maxima GN=ACS1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.356e-36
Identity = 69/102 (67.65%), Postives = 88/102 (86.27%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD-CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTT DRDTLK+LV+F+N  +IHL+CDEIY+ATVF +P F S+A++++EM+ C ++LIHI+YSLSKDMGLPGFRVGI+YS+ND VV   R+MSSFG V
Sbjct:  210 PSNPLGTTYDRDTLKTLVTFVNQHDIHLICDEIYSATVFKAPTFISIAQIVEEMEHCKKELIHILYSLSKDMGLPGFRVGIIYSYNDVVVRRARQMSSFGLV 311          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A12_ARATH (1-aminocyclopropane-1-carboxylate synthase 2 OS=Arabidopsis thaliana GN=ACS2 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.788e-36
Identity = 75/104 (72.12%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDC---NRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGT LD+DTL +LV F+  KNIHLV DEIYAATVF+   F SVAEV+ ++D    N DLIHI+YSLSKDMGLPGFRVGIVYSFND+VV+C RKMSSFG V
Sbjct:  208 PSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLV 311          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A1C_MALDO (1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 8.808e-28
Identity = 59/106 (55.66%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD-----LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTT+ R+ L  L+SF+ DK IHL+ DEIY+ T FSSP F SV EV+++ +C+ +      +H++YSLSKD+GLPGFRVG +YS +D VV    KMSSFG V
Sbjct:  200 PSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLV 305          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A13_SOLLC (1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.272e-26
Identity = 58/105 (55.24%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNR----DLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTTL+R+ L+ L++FI++K IHL+ DEIY+ TVF+SP F SV EV+ E +  +    + +HI+YSLSKD+GLPGFR+G +YS ++ VV+   KMSSFG V
Sbjct:  200 PSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVFNSPGFVSVMEVLIEKNYMKTRVWERVHIVYSLSKDLGLPGFRIGAIYSNDEMVVSAATKMSSFGLV 304          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A111_ARATH (1-aminocyclopropane-1-carboxylate synthase 11 OS=Arabidopsis thaliana GN=ACS11 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.170e-26
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD-LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGT+  R+ L  L++F + K IH+V DEIY+ TVF SP+FTSV EV ++ +   D  IH++YSLSKD+GLPGFRVG++YS N+ VV+   KMSSFG +
Sbjct:  198 PSNPLGTSTTREELDLLLTFTSTKKIHMVSDEIYSGTVFDSPEFTSVLEVAKDKNMGLDGKIHVVYSLSKDLGLPGFRVGLIYSNNEKVVSAATKMSSFGLI 299          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A17_ARATH (1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.833e-26
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMD--CNRDLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLG T+ +  L+ L+ F   KNIHLV DEIY+ +VF + +FTSVAE+++ +D    ++ +HI+YSLSKD+GLPGFRVG +YS+ND VV   R+MSSF  V
Sbjct:  215 PSNPLGATVQKKVLEDLLDFCVRKNIHLVSDEIYSGSVFHASEFTSVAEIVENIDDVSVKERVHIVYSLSKDLGLPGFRVGTIYSYNDNVVRTARRMSSFTLV 317          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A18_ARATH (1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.244e-26
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNR----DLIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTT  R  L  L+ FI+ K IHL+ DEIY+ TVF++P F SV EV+++         D +HI+YSLSKD+GLPGFRVG++YS +D VV+   KMSSFG +
Sbjct:  200 PSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTNPGFISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMSSFGLI 304          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A12_CUCMA (1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.077e-25
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD----LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGTT++RD L  +  FI  K IHL+ DEIY+ TVF SP F S  EV++E     +     +HI+YSLSKD+GLPGFRVG +YS +D VV    KMSSFG V
Sbjct:  200 PSNPLGTTMNRDELNLVFDFITSKGIHLISDEIYSGTVFGSPGFVSAMEVLKERSSEDEEVWKRVHIVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLV 304          
BLAST of FC919312 vs. ExPASy Swiss-Prot
Match: 1A19_ARATH (1-aminocyclopropane-1-carboxylate synthase 9 OS=Arabidopsis thaliana GN=ACS9 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.464e-24
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 P*NPLGTTLDRDTLKSLVSFINDKNIHLVCDEIYAATVFSSPKFTSVAEVIQEMDCNRD----LIHIIYSLSKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGFV 303
            P NPLGT L R  L  LV FI  KNIHL+ DEIY+ TVF   +F SV +V+++ +         +HI+YSLSKD+GLPGFRVG +YS ++ VV+   KMSSFG V
Sbjct:  200 PSNPLGTMLTRRELNLLVDFITSKNIHLISDEIYSGTVFGFEQFVSVMDVLKDKNLENSEVSKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLV 304          
The following BLAST results are available for this feature:
BLAST of FC919312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
1A1C_SOYBN1.038e-3666.351-aminocyclopropane-1-carboxylate synthase OS=Glyc... [more]
1A11_CUCMA1.356e-3667.651-aminocyclopropane-1-carboxylate synthase CMW33 O... [more]
1A12_ARATH8.788e-3672.121-aminocyclopropane-1-carboxylate synthase 2 OS=Ar... [more]
1A1C_MALDO8.808e-2855.661-aminocyclopropane-1-carboxylate synthase OS=Malu... [more]
1A13_SOLLC1.272e-2655.241-aminocyclopropane-1-carboxylate synthase 3 OS=So... [more]
1A111_ARATH2.170e-2655.881-aminocyclopropane-1-carboxylate synthase 11 OS=A... [more]
1A17_ARATH2.833e-2654.371-aminocyclopropane-1-carboxylate synthase 7 OS=Ar... [more]
1A18_ARATH8.244e-2654.291-aminocyclopropane-1-carboxylate synthase 8 OS=Ar... [more]
1A12_CUCMA1.077e-2555.241-aminocyclopropane-1-carboxylate synthase CMA101 ... [more]
1A19_ARATH3.464e-2453.331-aminocyclopropane-1-carboxylate synthase 9 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC06055B02T7 PCR Citrus clementina cDNA clone C06055B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919312 ID=FC919312; Name=FC919312; organism=Citrus clementina; type=EST; length=304bp
CCTTAGAATCCATTGGGCACAACTTTGGACAGAGACACACTTAAAAGCTT
AGTGAGCTTCATCAATGACAAGAACATTCACCTTGTATGCGACGAGATTT
ATGCGGCCACTGTCTTCAGCTCTCCTAAGTTCACGAGCGTTGCTGAAGTC
ATTCAAGAAATGGACTGCAATCGTGACCTCATTCATATCATTTACAGCTT
GTCTAAGGACATGGGGCTCCCTGGCTTTAGAGTTGGCATTGTGTACTCGT
TTAATGATACTGTTGTGAATTGCGGCCGCAAGATGTCAAGTTTCGGCTTC
GTGT
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